Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09727 ATGAAAATGAAAATGAAAATGTTACTCCCTACCATAACAACCTCTATGAGGTTTCTTACCTTCATTCTCCTCTTCCTCATTACCCCAACAATTGCACAATCCCCAATCTACATGTACAATTCTTGCCAGAACACAACAGGAAAATCTCTCCCAACTTCCTACCAGACCAACGTTAACAACCTCCTCTCTTGGATAACCTCAGATTCAGCCAAAGGCAACGAATATAACCACATCACCATAGGGAACAACAATGGTGATGATGTTGTTTATGGGAGCTATGATTGCAGGGGAGACATCACAGGATATTTTTGTCAATTCTGTCTCAACACTGCTGCCAGAGAAATTGTTCAACGTTGTCCTAACAGTGTCTCAGCTGTTATATGGTATGACATATGTATCATTCGTTACTCCAATCAGAGTTTCTTAGGAAAACTTTCTTTAACCCCATCATGGAATGTTACTGGATCTAAAAGTATAAAGGACTCAACAGAGGTTGGGAAAGCAGAGTCCAATATGGAGAGTTTGATAAGAAAAGCAACTATAGAGGCCAACCAGTCTTGGGCAATGGGTGAGTTTAATTGGAGTGACAATGAGAAAAGATATGGTTGGGTTCAGTGTGCTAAAGACCTTAGTAATGATGGGTGCAGATTGTGTTTGGAGGCTATGTTGGACATTGTTCCCAAATGCTGTGGGACAAAAGTGGGATGGGCAGTTGTGGCTCCAAGTTGTGGGATGAAGTTTGATGATTATTTGTTCTATCAGTTTAGTAATCAAACTGAATCCTCTTCTCCTATGCCTAATCCAGCCAAGCAAGAAGGTTCAAGTAGTACCAAAACCTTGATCATTACCTTAGTAAGTGTGTTGGTGGGAGTAGCTCTACTAAGTTGTTGTATCTACTTCTCCTGCAGAAGGAATGGGTTATGTAAAGATGGATTGCTGTTGAAGACCATTCCTATAACGTTTCATGAGCATGTTCAAAGAGAGGATTCATTGAACTCAGACCTTCCTATAATTCCTTTAACTGTAATTCAACAGAGCACAAATTTCTTTTCAGAGTCATCTAAATTAGGAGAAGGTGGATTTGGCCCTGTTTACAAGGGTACTTTACCAGATGGGACAGAAATTGCTGTCAAAAGGCTTGCAGAAACGTCTGGTCAAGGTTTAGAGGAGTTCAAGAATGAAGTAATCTTTATAGCTAAATTGCAACACAGAAACCTTGTGAAACTCTTGGGTTGCTGCATTGAGGAAAATGAAAAGATACTGATATATGAGTACATGCCAAATTCAAGCCTTGACTTTCACCTTTTCAGAATGCAATGTTCATTTACTTGTCAGATGAGGAAAAGCAAAAACAACTAG 1359 0.3959 MKMKMKMLLPTITTSMRFLTFILLFLITPTIAQSPIYMYNSCQNTTGKSLPTSYQTNVNNLLSWITSDSAKGNEYNHITIGNNNGDDVVYGSYDCRGDITGYFCQFCLNTAAREIVQRCPNSVSAVIWYDICIIRYSNQSFLGKLSLTPSWNVTGSKSIKDSTEVGKAESNMESLIRKATIEANQSWAMGEFNWSDNEKRYGWVQCAKDLSNDGCRLCLEAMLDIVPKCCGTKVGWAVVAPSCGMKFDDYLFYQFSNQTESSSPMPNPAKQEGSSSTKTLIITLVSVLVGVALLSCCIYFSCRRNGLCKDGLLLKTIPITFHEHVQREDSLNSDLPIIPLTVIQQSTNFFSESSKLGEGGFGPVYKGTLPDGTEIAVKRLAETSGQGLEEFKNEVIFIAKLQHRNLVKLLGCCIEENEKILIYEYMPNSSLDFHLFRMQCSFTCQMRKSKNN. 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09727 452 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 316 425 - -
Seca4g09727 452 Gene3D - 152 252 IPR038408 -
Seca4g09727 452 Gene3D - 35 141 IPR038408 -
Seca4g09727 452 Pfam Salt stress response/antifungal 42 139 IPR002902 -
Seca4g09727 452 Pfam Salt stress response/antifungal 168 250 IPR002902 -
Seca4g09727 452 Gene3D Phosphorylase Kinase; domain 1 317 425 - -
Seca4g09727 452 FunFam Cysteine-rich receptor-like protein kinase 28 38 140 - -
Seca4g09727 452 Pfam Protein tyrosine and serine/threonine kinase 353 438 IPR001245 GO:0004672|GO:0006468
Seca4g09727 452 ProSiteProfiles Gnk2-homologous domain profile. 36 141 IPR002902 -
Seca4g09727 452 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 38 437 - -
Seca4g09727 452 ProSiteProfiles Protein kinase domain profile. 350 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09727 452 ProSiteProfiles Gnk2-homologous domain profile. 147 252 IPR002902 -
Seca4g09727 452 SUPERFAMILY Protein kinase-like (PK-like) 329 440 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09727 Seca-Chr4 228460744 228465876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09727 22 436 Receptor kinase-like Gene Family AT4G05200 37.875 4.41e-94 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g09727 PK_Tyr_Ser-Thr 1.5e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09727 - - lja:Lj3g3v1855390.1 634.795