Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09723 ATGTCTGAAGAATCACAGAGAGTTGTGGTGATCCACTATGCATCAAAAGACTTTAGTACAAGTGCCATTAAATGGGCCCTGAATGGCTTTTCACTTGAGCGTGGAGATGAGCTTATACTTCTTGCAATTGTAAATAGTTCTAGTAGGATTCCCTTCATTGCACCTACCAGATTTCGGGGAATATTTGAGCTTGACCAGAAAATTGTTATGGAAGAGGTTGCAAAGAAGAAGGAAGAGTTCCATAACAATCCAAGCATTAGGAAGATCTCTGAGCAGTGTGAAACAGACAAGATTCAGTTCCGGACTGAAGTGCTTCCAGGAAATTTACCAGAGGTTGCTGTAATTGCTGCCATCCGTTTGAAGGCAACATCAGTGATACTTGATAGAGCTATGAAGACATACACCAAGGATTTCATGCAGAGTCTCTCTTGTGCTTTGCTGATAATGAAACGTGATAATTCCATTAAGCAATTGAAAGGGCCAAGGAAAACAAAGCTTTTTGGTAGAAGCAATGGCAATGCAAGTTGTGTAAGATGTTCTAGATCCTCACCACGTATGCAACGCATGGCAAATGCAGTTTTTTGTTTCAATCCCAGCTCTACTCTTACCAAGGCTGTGTGTCCTCGCCTTCATTCTCAAATAAAACAAAGCACTCAAAGTAGAGAACTAGACATGGCAAGAGGGTATTGCCTATTACCTATTCCTAATACTCCAAAGACTAGTGGTACTGAAATGCATCACATGGAAACAATAGTTGAACATAGCAACAACCATGAAGCATATCAGATAGTCAAGACTAGTGGTACCAATTTGTATAACATGGAGACAACAGTTGAACATAGCAACAACCATGAAGCATATCAGGTGGTTAAGACTAGTGGTACTGAATTGTATCACATGGAACATAACAACAACCATGAAGCATATCAGATAGATGAACAATTTAAAGATTATGTTTGTTCAGTGTGTGAGAACAGGAGACCAAAATTTGAATTGATGAAAGAATTCACCTATGCAGAGCTGCATGAAGCCACGAATGGTTTTTCCCCAAAGAACTATTTGTCAGAAGGCGGATTTGGTTCTGTCTACAGGGGGATGCTGCAAGGACTCAAGATTGCTGTTAAGCAACATAAGTGTGCAAGCCTCCAAGGAGAGAAGGAATTCAAGTCTGAAGTTAATGCACTCAGTAAAGCATTACATGAGAATGTGGTTATGCTTTTAGGATCTTGTTCAGAGGGAAATAACAGACTTCTTGTATATGAATTTGTTTGCAATGGCTCACTTGACCAACATTTATCAGAATACTCTCGTAAACCTCTTACTTGGCCAGACAGGATCAAAGTAGCTATGGGAGCTGCAAAAGGCTTATTGTACTTGCATGAGAACAATATAATACACAGAGATATGAGACCAAGTAACATCCTTGTCACACATGATTATGAAGCAATGCTGGGAGATTTTGGTTTGGCTAGAACAGAACAAATGGACTCCATATACTCAACAGATGTTGTTGGAACTTTAGGGTATTTGGCACCAGAATATGCAGAATCTGGTAAAGTGTCAACCAAGACAGATGTGTATTCTTTTGGGGTGGTTCTTCTTCAGCTAATAACAGGAATGAGGACCACAGACAAACGGCTTGAAGAGAAAAGTCTTGTGGGATGGGCTAGGCCACTTTTGAAAGAAAGGAACTATCCAGATCTAATTGATGAAAGGATGATGGATACATATGATTGCCATCAGCTTTTTTGGATGATTCGTCTAGCAGAAAAATGTCTAAGCAGGGATCCTCAGAAGCGATTATCAATGGATACGGTGGTGAGTGCCTTAAGTCATATAGTAGAAGGCAGCACATGCAGTATTGTACTTAGACACTGTTCCCCAGCACGGTCAGATTCATCCTACGACATATCAGAATCTGTGGAATCAGACGTCTCTAAGGAATTAGAAGGTGAAGATGGAAGCATGTATGTAGGATATACTCCAATTAATTTAAGAGCCCCACCATCTCCTCCAATAGGAAGCACTTCATCATGTCCATTCAGCATGTTCAAAGGGCTGAGTGAATCTCCTTCTGATGATTTAGCCAATAATGAGAAGAAGGGTGAAAGATCAAATAATCAAAGTGGGTGA 2133 0.4027 MSEESQRVVVIHYASKDFSTSAIKWALNGFSLERGDELILLAIVNSSSRIPFIAPTRFRGIFELDQKIVMEEVAKKKEEFHNNPSIRKISEQCETDKIQFRTEVLPGNLPEVAVIAAIRLKATSVILDRAMKTYTKDFMQSLSCALLIMKRDNSIKQLKGPRKTKLFGRSNGNASCVRCSRSSPRMQRMANAVFCFNPSSTLTKAVCPRLHSQIKQSTQSRELDMARGYCLLPIPNTPKTSGTEMHHMETIVEHSNNHEAYQIVKTSGTNLYNMETTVEHSNNHEAYQVVKTSGTELYHMEHNNNHEAYQIDEQFKDYVCSVCENRRPKFELMKEFTYAELHEATNGFSPKNYLSEGGFGSVYRGMLQGLKIAVKQHKCASLQGEKEFKSEVNALSKALHENVVMLLGSCSEGNNRLLVYEFVCNGSLDQHLSEYSRKPLTWPDRIKVAMGAAKGLLYLHENNIIHRDMRPSNILVTHDYEAMLGDFGLARTEQMDSIYSTDVVGTLGYLAPEYAESGKVSTKTDVYSFGVVLLQLITGMRTTDKRLEEKSLVGWARPLLKERNYPDLIDERMMDTYDCHQLFWMIRLAEKCLSRDPQKRLSMDTVVSALSHIVEGSTCSIVLRHCSPARSDSSYDISESVESDVSKELEGEDGSMYVGYTPINLRAPPSPPIGSTSSCPFSMFKGLSESPSDDLANNEKKGERSNNQSG. 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09723 710 PANTHER OS01G0253100 PROTEIN 243 615 - -
Seca4g09723 710 Pfam Protein tyrosine and serine/threonine kinase 352 610 IPR001245 GO:0004672|GO:0006468
Seca4g09723 710 ProSitePatterns Tyrosine protein kinases specific active-site signature. 464 476 IPR008266 GO:0004672|GO:0006468
Seca4g09723 710 SUPERFAMILY Protein kinase-like (PK-like) 333 616 IPR011009 -
Seca4g09723 710 ProSiteProfiles Protein kinase domain profile. 348 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09723 710 MobiDBLite consensus disorder prediction 666 710 - -
Seca4g09723 710 MobiDBLite consensus disorder prediction 630 649 - -
Seca4g09723 710 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 423 625 - -
Seca4g09723 710 Gene3D Transferase(Phosphotransferase) domain 1 423 623 - -
Seca4g09723 710 FunFam Proline-rich receptor-like protein kinase PERK8 310 422 - -
Seca4g09723 710 Gene3D Phosphorylase Kinase; domain 1 329 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09723 Seca-Chr4 228358222 228363678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09723 336 624 Trihelix Transcription Factor Family AT5G38560 45.364 4.63e-78 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Seca4g09723 PK_Tyr_Ser-Thr 5.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09723 - - gmx:100810950 964.911