Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09722 ATGAGACGGATGAAGAAGGAGATTGAAGTTGAGGTTCTCCCCAATGATCAGAGTGAGTCACAGTTAAATGATGAGGGTTGTGAAGGAAGTGCCTATGGAGTTGTTCTGAAAAAAGGGCCATGGACACCTGCTGAAGATGATATTTTGGTGGATTATGTCAAGAAGCATGGGGAGGGGAACTGGAATGCTGTTCACAAGCACACGGGCCTGTTACGTTGTGGAAAAAGTTGTCGACTGCGGTGGACTAATCACCTAAGGCCAAATTTAAAGAAAGGGGCGTTTACCACAGAGGAGGAGCGCTTGATTGCTGAGCTTCATGCAAAAATGGGAAACAAATGGGCACGCATGGCGGCACATTTGCCTGGTCGGACAGATAATGAGATAAAGAACTACTGGAACACCCGGATCAAGAGGCGTCAACGGGCTGGATTGCCACTTTATCCTCCTGAAGTGTGTTTGCAAGCATTACAAGAGAGTCAGCATGGCCAAAACACTTGTGGAATTAATGGTGGCAATAAAGTGCATCCTGATTTCTTGCAGAAAAAGAGTTATGAGATACATGATGCAATATTTGACAGTCTGAAGGATAACCAGGGAAGCTTACCTTATGTGCCTGAGCTTCATGATATTTCTGATTATGGCAATATGCTGAAAGGTCTTGATTCTTCTCAATTTTGTTTTGTGCCATCAACACCATCTAACCATAAACGTCTTCGAGAGTCAACAACGCCATTTCTTGATTCCGGTGGTATGAACAGAAATGGTTTTTATCCATTTGATTATATTCAGGATAATACTTCTGATAACATTGCACAATCATTTGGAATGCAATCACCCCTTGATCCTGGCCCCTCCTCACACAGCTCAATTTGTTACAGCCATTCCCTTTCAAATGGCAATTCCTCTACTTCTAAGCCAACTCCGGAGGCTGTGAAGTCGGAGCTCCCTTCACTCCAATATCCAGAAATTGATTTAGGTAGCTGGGGCACATCTCCCCCACCTCCTTTACTTGAGTCAGTTGATGATTTCATTCAGTCTCCTACGCCAATTAGTACACTGGACTCAGATTGTTCTTCTCCACAAAATAGTGGCCTGCTGGATGCTTTACTTTATCAGGCAAAGACTCTGAGCAGTTCAAAGAACCATTATTATGACAAGAGTTCAAATTCATCTACCGCAACTCCTGGCGACAGAGTGGACAGCTCTGCGCTGAACATGTATGACACAGAATTGGAAGACTATGCTGACCCTGTATCTCCATTTGGTGCATCTTCAATATTGAATGAGTGCCCTGCTGTTAGTGCCAATGTAATGAATTCATTGGATGAACAGCTACCTGTTCAAACCTTTAATGGCAACATTGTGAAATTAGAGTATGTTGACCAGGTTTGGACCCCTGATAGTGAAAATCAAACCATGTCTCTGTTGAATGTTACTCGGCCAGACTTCTTGCTTGCTTCAGATTGGTATGAGCTAGGTTCTGGGCATGGCAAGAACCAAGCCATCATGACTGATGCTACATCAACCCTTCTTGGAGATGATATAGCCACTGACTATAAACATATGACTGCTGGAACTTCTAAATCAAGTCAGGTGTTGATATCTCCTGGGCTGAGAAAGATTTTATATGGGCGTGATTTATAG 1644 0.4337 MRRMKKEIEVEVLPNDQSESQLNDEGCEGSAYGVVLKKGPWTPAEDDILVDYVKKHGEGNWNAVHKHTGLLRCGKSCRLRWTNHLRPNLKKGAFTTEEERLIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVCLQALQESQHGQNTCGINGGNKVHPDFLQKKSYEIHDAIFDSLKDNQGSLPYVPELHDISDYGNMLKGLDSSQFCFVPSTPSNHKRLRESTTPFLDSGGMNRNGFYPFDYIQDNTSDNIAQSFGMQSPLDPGPSSHSSICYSHSLSNGNSSTSKPTPEAVKSELPSLQYPEIDLGSWGTSPPPPLLESVDDFIQSPTPISTLDSDCSSPQNSGLLDALLYQAKTLSSSKNHYYDKSSNSSTATPGDRVDSSALNMYDTELEDYADPVSPFGASSILNECPAVSANVMNSLDEQLPVQTFNGNIVKLEYVDQVWTPDSENQTMSLLNVTRPDFLLASDWYELGSGHGKNQAIMTDATSTLLGDDIATDYKHMTAGTSKSSQVLISPGLRKILYGRDL. 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09722 547 MobiDBLite consensus disorder prediction 381 401 - -
Seca4g09722 547 Gene3D - 37 90 - -
Seca4g09722 547 CDD SANT 40 85 IPR001005 -
Seca4g09722 547 Pfam Myb-like DNA-binding domain 38 85 IPR001005 -
Seca4g09722 547 Pfam Myb-like DNA-binding domain 91 134 IPR001005 -
Seca4g09722 547 SUPERFAMILY Homeodomain-like 37 132 IPR009057 -
Seca4g09722 547 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 85 IPR017930 -
Seca4g09722 547 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
Seca4g09722 547 MobiDBLite consensus disorder prediction 272 310 - -
Seca4g09722 547 MobiDBLite consensus disorder prediction 272 342 - -
Seca4g09722 547 Gene3D - 93 139 - -
Seca4g09722 547 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 140 IPR017930 -
Seca4g09722 547 SMART sant 90 138 IPR001005 -
Seca4g09722 547 SMART sant 37 87 IPR001005 -
Seca4g09722 547 FunFam Transcription factor GAMYB 93 139 - -
Seca4g09722 547 CDD SANT 93 134 IPR001005 -
Seca4g09722 547 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 5 507 - -
Seca4g09722 547 FunFam MYB-related transcription factor 37 90 - -
Seca4g09722 547 ProSiteProfiles Myb-like domain profile. 36 85 IPR001005 -
Seca4g09722 547 MobiDBLite consensus disorder prediction 381 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09722 Seca-Chr4 228334977 228340918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09722 26 527 MYB Transcription Factor Family AT3G11440 44.168 4.34e-118 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g09722 Myb_DNA-binding 3.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09722 K09422 - gmx:100810415 854.744