Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09719 ATGGGCATGGCTGGGAAAGCATCCTTTTCATACGATGTCTTCCTCAGCTTCAGCGGTGAAGATACTCGATATGGTTTTACTGGATATCTCTACAATGCTCTCAGTCAAAGAGGAATCCATTGCTTCATTGATGACAAGGAGCTTCCAAAAGGGGAGGAACTCACACGAGGACTTGTCGAGGCAATTAAAGAATCCAGGATTGCCATCATTGTGCTTTCTAAGAACTATGCCTTTTCTTCATTTTGTTTACAGGAACTCACCACGATCCTTGAGTGCTTCAACGAGAAGAAGATTCGGTTTGTTATACCAGTTTTTTATAAGGTGGATCCTTCTGATTTGCGAAAAGGGACAGGCAGTTATGGAGAAGCATTGATCGCGCAGAAGAACAAGTTCAAGGATGATGAGAAGGTCAACACATGGAGAGAGGCTCTACAACAGGCAGCTAACATCGCCGGCTTTCATTTCAAGGATAGTCAAGTCTCCAGCAAGATTGGCCGAAGAATACATGCTACTAATTACCCAGTTGGATTGACACCTCGAGCGGATGAAGTAATATCGCGTCTGAAACTTGAGTCTGAGAAAGGAGTCCACATGGTGGGGATCTATGGATGTGGGGGAATAGGCAAAACTACAATTGCTCGAGAAGTGTATAACTCGATTAGTGACAATTTTGATGGTTCATGTTTTCTTGAAGATGTAAGAGAGAATTCACGTAAAAATGGCTTTGTACATCTCCAAAAGACGGTTCTTTCTGACATACTTGGAAATAAGGATATAAAGTTAAGAAATGAGATGGATGGAGAGTCAACAATAAAGCAAAGGCTTGGCAACAAGAAGGTTCTTTTGGTTCTTGATGATGTTGACCAGAAAGAACAGTTGCAGAAGATTGCTGGAGACCATGATTGGTTTGGTGTTGGTAGCAGAGTCATCATTACAACTCAGAACAGTGGTTTACTAAAAATCCATGGGGATATAAGTAAATATGAGGTGGAGTTGTTTAGCGATGAAGAAGCTCGTGAACTGCTTAGTTGGAATGCTTTTAAAACTAACAAAGTTGATCCAAAGTACAACGAGATTTTAAACCGTGCAGTGCGTTATGCTTCTGGCCTTCCATTGGCTTTGACAGTAATAGGTTCCGATTTACGTGGGAAAGAAAAAGAAGATTGTGAACTTATATTAGCTCAGTATGGCAGAATTTCTGAAAATAAGATCCAAAATATACTTAAAGTAAGCTTTGATTCATTGGACAATGAAGAGAAGAAAATTTTTCTTGACATTGCTTGTTGCTTTGGAGGGTATAAATTGTCTGATGTTGAAGAAATACTTCATGCTCATCATGGTTCATCAATGAAACCTTGTATTGATCTTTTGATTGAAAAATCTCTAATAAAAATTGAAGATGGTCTTGTGACATTACAAGGGTTGATACAAGACATGGGTAGAGAAATTGTCCAACAAGAAGCATCAGAACCTGGCAAACGTAGTAGGTTATGGTCCTATGAAGATGTAGTTCAAGTTTTACAAGAAAATGCGGGAACTAGCAAAATTCAAATCTTAGTTCTGGATTTCCCCAAAGATGAAGCACACTCAAAAGGACCTAAATGTGAAGAAGTACATTGGGATGGAGAGGCCATCAAGAAGATGAAAAACCTCGGAACACTTATTATTAGAAATGGTTGTTTTTCCATTGGCCCCAAACATCTTCCAAATAGTTTAAAAGTGTTAAAATGGTCAGGATATCCTTCCCAATCTTTACCAAGTTGTTTTAATCCAAAGAAACTCTCCATACTTGAGTTACCTGAGAGTCACTTGAAGGCATGTCAACAAATTCAGGCAAGTACTAATGTACTATGTATACACATATATAATACACACACACACATGTTGACGTCAAATTCTTGTGATTATATTTCGCTCATTTTTTATGTTTTCTATTTTTTGCAGAAGTACACATATTTGAGAGTTTTGGATTTTGGCTACAGTGAATTTGTAACTGAGATACCTGATGTAACTGGCGTCCCAAATTTAGAAAAATTATCATTTAGACATTGTGAGAATTTAACTAAAATTCATGACTCAGTTGGATGTCTGGGAAATCTTAAAATCTTGGATGCTGTTAGCTGCAAGAATCTTAAGGCTTTTCCACCCATCATATTGATCTCTCTTGAACAACTCAATCTTTCACGTTGCTCAAGTCTTGAGAGCTTCCCAGAAATATTGGGGAAGATGGAAAATATAAAAGAGCTTCATATAGCAGAGACTCCCATAAATGAATTGCCACCTTCAATTCAATACCTTACACAGCTTCGAAAATTAGAACTGCAACTCTGTGGAATGGTACAGTTACCAAGTAGCATTGTCATGTTGCCAGAACTGGCTTTGATGCATTTTTCGAAATGTCGAAGTTTGCAATTATCTAAACAGGACAAAGGTGAAGAAATGGTGTCTATGTCTTCAAACACAGAATGTCTTACTTTCTCATGCTGCAATATTTCAGATGAATTTTTTCCAATGGGTCTCACTTGGTTTGCCAATGTCAAAGATTTAAACCTATCCGGGAATAGTTTCAAAATCCTTGATGCATGCTTCAAAGAATGTCACTATTTGAGGAACCTTAAGCTGGATGATTGTGTGCATCTAGAAGAAATTAGAGGGATTCCACGGGTTTTAGAAACATTTTCTGCTAAAGGATGCACGTCCTTGAGATCCTTAGACCTCACAGTTCTTCCTGCATGTACCAGTGAATGTCTCTCTCTGAAAGAACTTATTTTAGATGATTGCGTGTATCTTCAAGAAATTAAAGGGGTTCTGCCAAACTTGGATCATTTCTCTGCCAAAAACTGCACATCCTTGACTTCCAGGTGTACAAGCATGTTAATGAATCAGGAATCAGTAGAAGCTGGAAACAAGATGTTTTCTTTGCCAGGAACAAAGATTCCAGAGTGGTTTGCATGCAGCACAAGGGGAGATTCAATATTGTTTTGGTTCCGTAGAAAATTCCCCGCAATTTCTCTTTGTCTTGTTATTGGACCTATGGATGAGAAACGTATCACAGTCAAGTTTAGCCCCAGAGTATTCATCAATGGCAATGAACAATCCCTTGCCAGTAGGAAAGTTTACGAGTTCAGGATAGCCACAGATCATATATTTTTGTTTGATATACAGCTGCTAAAATTAGAAGATGATGTGCACATGGTATGTTCAGAAAAAGAGTGGAATCGTGTGCAGGTCTCATATGCAGATCATATGACGGACAATTTGCACCAAATTGGACATGTTGCCAAACACAGTGGAATCTATGTCTTTAAACAAACAAGCATGGAGGATATTCAATTCTCTGATCCAAACGATAGAAAGAGAAAATCACGTTGGGAAACAATAAGGCAGTTGAAAGAAAAGCATAGCTTGACGGGCATTAGAGTTTCTGAGACCCAATGTACACAGAATGAACAACATGGGGCTCTATTGACATTGCAAGTGGAGAACAGCAAGGAGCAGTTTTCATCGCATTCTGCACAAGCAATGAAAAATGTGAATTGCAATCCAGATTCAATGGAGGGGGCGGATGAAATAACTAAGAAGAAGAGACCACGGAAAGACCAGAATATGGTGCAAACCATATATTGTGGGACGTGTTCTGGAGATGCATCTCTAAGATCTATTAGAGAGGCTATCAATGACTTGGAGCTGTTAACGGTTAAGGACTTATCTGAAGTATCTTCTGAGTCTGCCATGCAGTCTCGACTTGACCACCTCCTGGTTCTTTTGAGCACAAGTAGCCACCCTGAGGTGACAGTAGAGGTGAAGGAAGCTATCGTTGAGTTCAAGACGAAGGCCTCGGCTACTGTTGAGTCTGTAAACAAACTGAAGAATTTTGAGAAGCACAGGGCTACAATTCAGCGAAAGACTGTCACAAGAGTCACGGGCAAGGGTCGACGGATTGACCTCAAGAACTCAAAGAAAAAGGTTTCGGGGGCCATGAAGGCAGATTATAAAAGGAAGAAGGAGCTAGAGGCAGAAATTGAAACTTTAAAGAAACAACTAGCTGCCAAAGAAATGGACCTCGAACAACTTGTGTTGAATCTCAAGAATCGGGAAGCAAAACTCTCAACCTGTTCAATGAATTGTGCTTCTCTCAAGGAGCAAGCTCGAAAGCTGTTAAAAGAAGCTGATGATCTACTCACTGAATAA 4191 0.3937 MGMAGKASFSYDVFLSFSGEDTRYGFTGYLYNALSQRGIHCFIDDKELPKGEELTRGLVEAIKESRIAIIVLSKNYAFSSFCLQELTTILECFNEKKIRFVIPVFYKVDPSDLRKGTGSYGEALIAQKNKFKDDEKVNTWREALQQAANIAGFHFKDSQVSSKIGRRIHATNYPVGLTPRADEVISRLKLESEKGVHMVGIYGCGGIGKTTIAREVYNSISDNFDGSCFLEDVRENSRKNGFVHLQKTVLSDILGNKDIKLRNEMDGESTIKQRLGNKKVLLVLDDVDQKEQLQKIAGDHDWFGVGSRVIITTQNSGLLKIHGDISKYEVELFSDEEARELLSWNAFKTNKVDPKYNEILNRAVRYASGLPLALTVIGSDLRGKEKEDCELILAQYGRISENKIQNILKVSFDSLDNEEKKIFLDIACCFGGYKLSDVEEILHAHHGSSMKPCIDLLIEKSLIKIEDGLVTLQGLIQDMGREIVQQEASEPGKRSRLWSYEDVVQVLQENAGTSKIQILVLDFPKDEAHSKGPKCEEVHWDGEAIKKMKNLGTLIIRNGCFSIGPKHLPNSLKVLKWSGYPSQSLPSCFNPKKLSILELPESHLKACQQIQASTNVLCIHIYNTHTHMLTSNSCDYISLIFYVFYFLQKYTYLRVLDFGYSEFVTEIPDVTGVPNLEKLSFRHCENLTKIHDSVGCLGNLKILDAVSCKNLKAFPPIILISLEQLNLSRCSSLESFPEILGKMENIKELHIAETPINELPPSIQYLTQLRKLELQLCGMVQLPSSIVMLPELALMHFSKCRSLQLSKQDKGEEMVSMSSNTECLTFSCCNISDEFFPMGLTWFANVKDLNLSGNSFKILDACFKECHYLRNLKLDDCVHLEEIRGIPRVLETFSAKGCTSLRSLDLTVLPACTSECLSLKELILDDCVYLQEIKGVLPNLDHFSAKNCTSLTSRCTSMLMNQESVEAGNKMFSLPGTKIPEWFACSTRGDSILFWFRRKFPAISLCLVIGPMDEKRITVKFSPRVFINGNEQSLASRKVYEFRIATDHIFLFDIQLLKLEDDVHMVCSEKEWNRVQVSYADHMTDNLHQIGHVAKHSGIYVFKQTSMEDIQFSDPNDRKRKSRWETIRQLKEKHSLTGIRVSETQCTQNEQHGALLTLQVENSKEQFSSHSAQAMKNVNCNPDSMEGADEITKKKRPRKDQNMVQTIYCGTCSGDASLRSIREAINDLELLTVKDLSEVSSESAMQSRLDHLLVLLSTSSHPEVTVEVKEAIVEFKTKASATVESVNKLKNFEKHRATIQRKTVTRVTGKGRRIDLKNSKKKVSGAMKADYKRKKELEAEIETLKKQLAAKEMDLEQLVLNLKNREAKLSTCSMNCASLKEQARKLLKEADDLLTE. 1397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09719 1396 Gene3D Ribonuclease Inhibitor 534 719 IPR032675 -
Seca4g09719 1396 Coils Coil 1376 1396 - -
Seca4g09719 1396 Pfam TIR domain 11 163 IPR000157 GO:0007165
Seca4g09719 1396 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 426 IPR027417 -
Seca4g09719 1396 Pfam NB-ARC domain 182 385 IPR002182 GO:0043531
Seca4g09719 1396 ProSiteProfiles TIR domain profile. 9 175 IPR000157 GO:0007165
Seca4g09719 1396 SUPERFAMILY "Winged helix" DNA-binding domain 402 508 IPR036390 -
Seca4g09719 1396 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 171 - -
Seca4g09719 1396 Coils Coil 1327 1368 - -
Seca4g09719 1396 PRINTS Disease resistance protein signature 274 288 - -
Seca4g09719 1396 PRINTS Disease resistance protein signature 367 381 - -
Seca4g09719 1396 PRINTS Disease resistance protein signature 198 213 - -
Seca4g09719 1396 PRINTS Disease resistance protein signature 717 733 - -
Seca4g09719 1396 SMART till_3 10 150 IPR000157 GO:0007165
Seca4g09719 1396 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 804 IPR044974 GO:0006952
Seca4g09719 1396 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 153 IPR035897 -
Seca4g09719 1396 Gene3D - 168 325 IPR027417 -
Seca4g09719 1396 SUPERFAMILY L domain-like 578 954 - -
Seca4g09719 1396 Gene3D - 9 167 IPR035897 -
Seca4g09719 1396 Gene3D - 333 416 IPR042197 -
Seca4g09719 1396 Gene3D Ribonuclease Inhibitor 720 966 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09719 Seca-Chr4 228241815 228247641 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09719 7 826 WRKY Transcription Factor Family AT4G12020 29.181 1.01e-69 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09719 - - mtr:25501119 1304.66