Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09718 ATGGACAAAGAAGTGCAGGGCATTTTTCATCCATTACATGACTTGATACATGACATTGGTAGAAAAATTGTCCAATTGGAATCACCAAATGTCCTAAACCCTAAACCTATTGGTAGAAAAATCTCGTGTATGATACATGACATTGGTAGAAAAATTGTCCAATTGGAATCACCAAATGAGCCTGGCAAACATAGTAGTTTATGGTTCTCCAAAGACATAGTTGAAGTTTTAGAAGAAAATACGGGATCTGGTACAATTCGCTTATTACCGGATTTTCTCAAAGATGAAGTACACTCAAATGGACCCAAAGGTGAAGAAGTATATTGGGATGGAGATGACTTCAAGAATTTCAGTAAAATGGAAAACCTCAGATTCCTTTCTATTAGAAATGTGCAATTCAACAGAGGCCCTACACATCTCTCAGAGAGTTTAACATCAGTGATCAACTGGAGTGAGTATTTCTTTTTAAGGATAAGTGAACAAATTCAAGGGTTGCAGGGGTTCATATATCTGACTGTTTTGGATTTCACCCACTGTAAATGGATTACTCATATACCTGATGTATCTGGCCTCCCAAATTTGAAAAAATTATCTTTTAAATATTGTGAGAATTTAATTCAAATTCACGACTCTGTTGGATTTCTGGATAATCTTAGAATCTTGGATGCGTTTCATTGCAAGAATCTTAAGACTTTACCACCTATCAGATCTACCTCTCTTGTATATCTCAATATTTCATATTGCACAAATCTTGTGAGTTTCCCAAAAAGATTGGGGAAGATTGAAAATATAGTACCTCTTCATATGATGGGGATTCCGATGAAAAAATTTCCATTTTCATTTCAAAACCTTACTCAGCTTCAAAAATTAAAACTGGAAAACTGTGGAATGGTTCTTTTACCAAGGATAAGTGAACCGATTCAAGGGTTCATGTGTGTGACTGTTTTGGATTTCAGCTACTGTGAATGGATAACTCATATACCTGATGTATCTGGCCTCCCAAATTTGAAAAAATTATCTTTGAAATATTGTGAGAATTTAATTCAAATTCATGACTCAGTTGGATTTCTAGATAAACTTAGAATCTTGGATGCTTTTCATTGCAAGAAGCTTAGGGCTTTTCCACCTATTAGATTGACCTCTCTTGAACATCTCAATCTTTCATGTTGCTCAACTCTTGAGAGTTTCCCAGAAATACTGGGGAAGATGGAAAATATTGTACAGCTTCATATAATGGGGAGTCCTATAAAAGAATTGCCATTTTCAATTCAAAACCTTACTCGGCTTCAAAAATTAAAACTGGAAATCTGTGGAATGGTTCATTTACCAAGTAGCATTGTCATGTTGTCAGAACTTGGTTGGATGTGTGTTTCAAGATGTGAAGGGTTGTGGTTATCTAAACAGGGCAAAGGTGAAGAAATGGAGTCCAAGTCTTCAAACACAGAATGTCTTATTCTTTCATACTGCAATATATCAGATGACTTCCTTCCAATAGGTCTTACTTGGTTTGCCAATGTGAAAGATTTAGACCTATCTGGGAATAATTTCACAATTCTTAATGCATGCATAAAAGAATGTCACTTTTTGAGGAACCTTAAGCTGGATGATTGCAGGCTTATACAAGAAGAACTGGTAGAGGCTGGCAACAAAATGTTTTCTTTGCCAGGAACAAATACTCCAGATTGGTTCACATACTGTACAAGTGGAGAGACAATATCTTTCTGGTTTCGTGGCAAATTGCCTGCAATTTCTCTCTGCCTTGTTATTGGACATATTGGGGAACAACCTTTCATGGTCAAGTTTAGCCCCAGAATAGTCATCAATGGCCTAGAACAGTACCTTGGCAGTTGGAAAGTTCATAAGTTCAGGATAGCAACAGATCATATACTTTTGTTTGATGTACGACTGCTAAAATTTGAAGATAGTCTGGACATATCGCTTGTAGAGTTTGACTGGAATCAAATGGAAGTCTCATATGTAGATCATATTACCAACGAGGTACCAATCAGACTGGTTGCCAAATTTAGCGGAATCCATGTATTGAAACAAACAGGTGGCATGGGGGATATCCGATTCACCTGTCCTTATAAAAAAAGGATAACTGGAAAGGGTAAAGGGCCACATCAAAGAGTAAAGACTTCGACAGAGAGACCCCAGAAAAACCAGACTATGGTGTTATCTTCCCCCAGTCTCACATCGACCCAATCTCCACCTCCACCTGCTGAAGCTGAAAAAGGCCTAGCCCCTCAACTGACATTTGCAGTTAAGAGGCCTTTGGAAGATGTGGAAGGGAAAACTTCAGAGAGGCTTTCAGAAGATGAAGTTCATCATACTACAATTCAAAATGAGCCTCCTGTCATTGAAAGATGTCATAAGGGTGATGATGTTGAACTGGAAGGGGTATCCTCTTGTGAATGTGAAACTGAAGTTTCTTCTAACACCAAGGGTTCTGACTCAGATGATCCCTTGGGAAAGGTTTATAGCAAGATTACTCGTGTTCCTTTACATATTGTTGATTACCCAGTTGGATTGGAGTCTCGAGTGCTTAAAGTAAATTTGCTTCTGAATGTTGGGTATGATGATGTAGTCCACATGGTGGGGATCCATGGAATGGATGGAATTGGTAAAACTTCAATTGCTTGGGCAGTATATAATTTGATTAATGACCAGTTTGAAGGTTTGTGTTTTCTTGATAATGTCAGAGAAAATTCAACTAAATACAGCTTAGTACATCTCCAAAAGATGCTTCTTTTTGAGATAGTTGGAGACAAGGATATTAACTTACAAAATTTAGATGAAGGAATTTCAATGATAAAGCATAGGCTCTACCGAAGAAAGGTTCTTTTGGTTCTTGATGATGTTGACAAGATAGAGCAGCTGCAGGCTATTGTAGGAGGACCTGATTGGTTTGGTCCTGGAAGCAGAGTCATCATTACAACTCAGGACAAGCATTTGCTGGCAAGTCATGGGGTTGAGAGCACATATGAGGTGGAGGAATTAAGTGAGGAAGAAGCTCTTGATTTGCTCCGTTGGAGTGCTTTCAAAGCTAACAAAGTTGATCCAAGTTATGCAAATGTTTTAAAACGTGCAGTGACATATGCTTCTAGGCTTCCATTGGCTTTGGAAGTAATGGGTTCCTACTTGTTCGGAGGAAGTATAAACAGCTGGAATCATGCATTAGATCAGTATGAACAAATTCCTGATAAAAAGATCCAAAAGATACTTAAAGTGAGCTATGATTCCCTGCAGGAAAAAGAGAAGGCAATTTTTCTTGACATTGCATGTTTCTTCAATGGACATAAACTGGCTGACATTGAAGATATACTCTCTGCTCATCATGGTATTTCCATGAAATATTATATTGAACTGTTGATTGAAAAGTCTCTTGTTAAGATTGATGATGGTCTTGTGACATTACATGACTTAATTCAAGACATGGGCAGAGAAATTGTCCGACAGGAATCACCAAATGAGCTTGGCAAACGAAGTAGGTTATGGTTCCCTAAAGATGTAGTTCGAGTTTTAGAAACAAATACGGGATCTAGTACAATTGAAAGCTTAGTTTTGGATTTCCCCAAAGATGAATTACACTTGGATGGACCTGACTGTGAAGAAGTATATTGGGATGGAGAGGCCTTCAAGAATATGAAAAACCTCAAAACACTTATTATTAGAAATTGTCGTTTTTCCAAAGGCCCCACACATCTTCCAAATAGTTTAAGAGTGCTGAAATGGTGGAATTATCCTTCATCATCTTTACCTTCTGATTTTGATCCAAAGGACCTTGCCATACTTGAGTTACCTGATAGTTTCTTAACGACGAGTGAACCAATTCAGGCAAGTATTGTGTTTGTATACTTGTCAAGGTTCAGATATCTGACAGTTTTGGATTTTGGCTACTGTGAATCGATAACTCATATACCTGATGTATCTGGCCTCCCAAATTTAGAGAAATTATCTGTTAAACATTGTGAGAATTTAAATGAAATTCACAAGTCAGTTGGATTTCTGGACAAACTTAGAATCTTGGATGCTGTTTGTTGCGTGAAGCTTGGGACTTTTCCACCCATCAGATTGACCTCTCTTGAATTACTCAATCTTTCACATTGCCTAGCTCTTGAGAGTTTTCCGGAAATATCTGGGAAGATGGAAAATCTAACAGAGCTTCATGTAGTGGGGAGTCCCATAAAAGAATTTCCATTTTCCATTCGAAACCTTACTCGGCTTCGAAAATTAGAACTGCAATTCTGTGGAATGGTTCAGTTACCAAGTAGCATTCTCATGATGCTAGAACTGAGTGTGATGCATGTTTCGAGATGTGAAGGGTTGTGGTTATCTAAACTGGATCAAGATGATAAAATGGAACCTGTAGAGGCTGGGAACAAGATGTTTGTTTTTCCAGGATCAAAGTCTCCAGAGTGGTTAACACACTGTACAAGAGGAGGGTCAATTTCTTTCTGGTTTCATAACAAATTCCCTACAATTTCTCTTTGTCTTGTTATTGGACCGGTGGATGAGCATCCTATCATGGTCAAGTTTAGTCCTGTAATATTCATCAATGGCAATAAACAGTCCATTGCTTGTCAGAAAGTCTATGAGTTCAGGATAGCAACGGATCATGTATTTTTGTTTGATCTACAACTGCCTAAATTTGAAGATAATGTGGACACGGTATGTTCAGAAAAGGAGTGGAGTCGTGTGGATGTTTCATATGCAGATCATATTACCAAGGACGCGATCCCAATCAATCTGGTTACCAAACAAATTGGAATCCACATATTTAAAGAAACAGACATTATGGCGAATATCCTATTCGCCAATCCACACTCAGATGAATTTCTCTTGATGTCGGAATCAATGGAGGGGTCATCCCATCAAAGAGTAAAGACTAAGCCAGAACAACCTCACAAAGCCCTGGCTATCATGCCATCTTCACCCATTCTCACATCAACCCAACCTTCACTTGCTGAGGCTCTAAAAGGTCAAGCCTCTCCACCGGCACCTTCATTTGAGAGGTTTTGGGATGAAGTTCATCCTACTGCAATTCAAAATGATTCACCGGTCAATGAAGAAGGTATTGGGAGTGATGATGTCGAAGTGGCAGCTATGTCCTCCAACTCTGAAAGTTCGGACTCAGATGACCCCTTTGAGCTGGTCAATACAGAACTCTCTGTTAATGAGAAGCAAACCATGTCTTCTGGGGTGAATTCGGGAGATGCATCTCTAACATCTATTCAAGAGGCTATGGAAGACTTTGAGTTGGTAATGGTTAAGGACTTATCTGAAGTCTCTTCTGATCCTGCCACACAATTTCGACTTGATCACCTTCTGGATTTATTGAGCACAAGTAGCCACCCTATGGTGACAGAAGAGGTGAAGGAGGATCTTATTAATTTCAAGAGAAAAGCCTTTGCGTCATTCCAAGAATTCCAAGTTAATGTTGAGTCTGTGAACAAACTGAAAAATTTTAAGAAGCACAGGGCCAGAATTCAGCAGGAGACTGTCGCAGGCAGGGATCATAGGAAGGACCTCAAAAACTCAATAAAAATAGCTTCTTTGGCTATAGAGGCAGAAAATAGTCGGAAGAAGGAGCTAGAGGCAGAAATTGAAACTTTAAGGAAACAACTAGCTGTCAAAGAAACGGACCTTGAACAACTTGTGTTGAATGTCAAGAATCAGGAGGCAACACTCTTAACCTATTCGAGGAATTATGCTTCTCTCAACGACCTAGCTCAAGTTCTATTAAAACAAGCTGTTGATCTAGTTGCTGAAAACACTGGAGTTGAGGATGAGGGTGAAGCTGCGGAAATAAATCAGAATAGGCTCAAGTCGGCCTGGTCTACTGACCTAACTAGCCACTGCGTTCGTCAGCGCGCAACTGCATCTTCTTCTCCGGCGGTGACTCCAGCTCCGTTCATCGTTCGCGTGACTGCGTCTCCAGCTGCGTCTCCTGCGCCGCGCATTTGTCTGTGTCGCCACCGTCTCCGTTGCGCGTCTGTCTGCGTCTCCTCCGTCTCCGTCGCCGCTGCTTGA 6033 0.3958 MDKEVQGIFHPLHDLIHDIGRKIVQLESPNVLNPKPIGRKISCMIHDIGRKIVQLESPNEPGKHSSLWFSKDIVEVLEENTGSGTIRLLPDFLKDEVHSNGPKGEEVYWDGDDFKNFSKMENLRFLSIRNVQFNRGPTHLSESLTSVINWSEYFFLRISEQIQGLQGFIYLTVLDFTHCKWITHIPDVSGLPNLKKLSFKYCENLIQIHDSVGFLDNLRILDAFHCKNLKTLPPIRSTSLVYLNISYCTNLVSFPKRLGKIENIVPLHMMGIPMKKFPFSFQNLTQLQKLKLENCGMVLLPRISEPIQGFMCVTVLDFSYCEWITHIPDVSGLPNLKKLSLKYCENLIQIHDSVGFLDKLRILDAFHCKKLRAFPPIRLTSLEHLNLSCCSTLESFPEILGKMENIVQLHIMGSPIKELPFSIQNLTRLQKLKLEICGMVHLPSSIVMLSELGWMCVSRCEGLWLSKQGKGEEMESKSSNTECLILSYCNISDDFLPIGLTWFANVKDLDLSGNNFTILNACIKECHFLRNLKLDDCRLIQEELVEAGNKMFSLPGTNTPDWFTYCTSGETISFWFRGKLPAISLCLVIGHIGEQPFMVKFSPRIVINGLEQYLGSWKVHKFRIATDHILLFDVRLLKFEDSLDISLVEFDWNQMEVSYVDHITNEVPIRLVAKFSGIHVLKQTGGMGDIRFTCPYKKRITGKGKGPHQRVKTSTERPQKNQTMVLSSPSLTSTQSPPPPAEAEKGLAPQLTFAVKRPLEDVEGKTSERLSEDEVHHTTIQNEPPVIERCHKGDDVELEGVSSCECETEVSSNTKGSDSDDPLGKVYSKITRVPLHIVDYPVGLESRVLKVNLLLNVGYDDVVHMVGIHGMDGIGKTSIAWAVYNLINDQFEGLCFLDNVRENSTKYSLVHLQKMLLFEIVGDKDINLQNLDEGISMIKHRLYRRKVLLVLDDVDKIEQLQAIVGGPDWFGPGSRVIITTQDKHLLASHGVESTYEVEELSEEEALDLLRWSAFKANKVDPSYANVLKRAVTYASRLPLALEVMGSYLFGGSINSWNHALDQYEQIPDKKIQKILKVSYDSLQEKEKAIFLDIACFFNGHKLADIEDILSAHHGISMKYYIELLIEKSLVKIDDGLVTLHDLIQDMGREIVRQESPNELGKRSRLWFPKDVVRVLETNTGSSTIESLVLDFPKDELHLDGPDCEEVYWDGEAFKNMKNLKTLIIRNCRFSKGPTHLPNSLRVLKWWNYPSSSLPSDFDPKDLAILELPDSFLTTSEPIQASIVFVYLSRFRYLTVLDFGYCESITHIPDVSGLPNLEKLSVKHCENLNEIHKSVGFLDKLRILDAVCCVKLGTFPPIRLTSLELLNLSHCLALESFPEISGKMENLTELHVVGSPIKEFPFSIRNLTRLRKLELQFCGMVQLPSSILMMLELSVMHVSRCEGLWLSKLDQDDKMEPVEAGNKMFVFPGSKSPEWLTHCTRGGSISFWFHNKFPTISLCLVIGPVDEHPIMVKFSPVIFINGNKQSIACQKVYEFRIATDHVFLFDLQLPKFEDNVDTVCSEKEWSRVDVSYADHITKDAIPINLVTKQIGIHIFKETDIMANILFANPHSDEFLLMSESMEGSSHQRVKTKPEQPHKALAIMPSSPILTSTQPSLAEALKGQASPPAPSFERFWDEVHPTAIQNDSPVNEEGIGSDDVEVAAMSSNSESSDSDDPFELVNTELSVNEKQTMSSGVNSGDASLTSIQEAMEDFELVMVKDLSEVSSDPATQFRLDHLLDLLSTSSHPMVTEEVKEDLINFKRKAFASFQEFQVNVESVNKLKNFKKHRARIQQETVAGRDHRKDLKNSIKIASLAIEAENSRKKELEAEIETLRKQLAVKETDLEQLVLNVKNQEATLLTYSRNYASLNDLAQVLLKQAVDLVAENTGVEDEGEAAEINQNRLKSAWSTDLTSHCVRQRATASSSPAVTPAPFIVRVTASPAASPAPRICLCRHRLRCASVCVSSVSVAAA. 2011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09718 2010 Coils Coil 1848 1896 - -
Seca4g09718 2010 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 41 257 IPR044974 GO:0006952
Seca4g09718 2010 Pfam NB-ARC domain 864 1084 IPR002182 GO:0043531
Seca4g09718 2010 SUPERFAMILY L domain-like 117 459 - -
Seca4g09718 2010 Gene3D - 999 1083 IPR042197 -
Seca4g09718 2010 SUPERFAMILY Outer arm dynein light chain 1 420 547 - -
Seca4g09718 2010 SUPERFAMILY "Winged helix" DNA-binding domain 1069 1176 IPR036390 -
Seca4g09718 2010 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 833 1093 IPR027417 -
Seca4g09718 2010 Gene3D Ribonuclease Inhibitor 467 576 IPR032675 -
Seca4g09718 2010 PRINTS Disease resistance protein signature 1357 1373 - -
Seca4g09718 2010 PRINTS Disease resistance protein signature 1034 1048 - -
Seca4g09718 2010 PRINTS Disease resistance protein signature 865 880 - -
Seca4g09718 2010 PRINTS Disease resistance protein signature 941 955 - -
Seca4g09718 2010 SUPERFAMILY L domain-like 1152 1442 - -
Seca4g09718 2010 Gene3D - 826 993 IPR027417 -
Seca4g09718 2010 Gene3D Ribonuclease Inhibitor 1196 1357 IPR032675 -
Seca4g09718 2010 Gene3D Ribonuclease Inhibitor 238 377 IPR032675 -
Seca4g09718 2010 Gene3D Ribonuclease Inhibitor 67 237 IPR032675 -
Seca4g09718 2010 Gene3D Ribonuclease Inhibitor 1358 1496 IPR032675 -
Seca4g09718 2010 Gene3D Ribonuclease Inhibitor 378 466 IPR032675 -
Seca4g09718 2010 MobiDBLite consensus disorder prediction 716 732 - -
Seca4g09718 2010 MobiDBLite consensus disorder prediction 700 748 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09718 Seca-Chr4 228187146 228197996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09718 247 460 WRKY Transcription Factor Family AT4G12020 34.361 1.88e-15 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09718 - - mtr:25501119 776.163