Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09710 ATGTCTTCCTTAAAGGCCTACGGTAAAGTTGATGAAGCAGACCAAGCAATGCTTGAAGTTCGTAGGAAAACCCGAAAGCGAATCACCATCATAAGCTTGTCCACAATAGTCCTAATTGGTGTTGTTTGTGCTGCTGTTTTTGGAACCATTGCTCATAATAATGGCCATGATGATGATGACAACAACAATGCTCAATCTCTTTCAAGTAATTCTGTGGTGAAGGCTGTTTGTGATGTGACATTGTACAAGGACTCATGCTATAGCAGCCTTAGTCCTCTTGTGCATTCGGGTCATGTTCAACCTCAGGAGCTCTTCTTGTTGTCCATCCAAGTGGCCTTCAATGAGGTTTCAAGAGCTGTTGAGTATTTCTCTGAGCAGGGAGATTTTAAGGGGTTGAGTGTGGATAATAGGACCAAGGAAGCTTTGAAAAATTGTGGGGATCTTTTGGGTCTTGCTGCTGATCATTTGAATAGCTCTTTGTCTTCTGGGGAAAAGTCTTCATTGCTTGATGTTTTGGAGGATCTTAAAACTTGGTTGAGTGCTTCAGTGCTTAATGATTATTCGTGTGCTGAAACTGCAGGTACATACCAGCAAACTTGCATTGATGGCTTTGATGAGGCAGGAGAAGCATTGAAGTCCAGTGTTGTAAGCAATCTCAAAAATTCTACAGAGTTCACCAGTAACAGTCTTGCCATCATTACTTGGCTTAACAATGCTGCAACCACAGTGAACTTGAGGCGCTTGTTGACTTTGCCTAATCAGAATGAAGAACCAAACTGGCTTCATTCTAAAGACCGGAAGCTACTTCAAACAGATGATTTGAAGAAGAAAGCTGACATTGTTGTGGCCAAAGATGGCAGTGGGAAATACAAAACAATCTCTGATGCACTTAAACATGTCCCTGAGAAAAGTGACAAGAGAACTGTAATCTATGTGAAGAGAGGGACTTACTATGAAAATGTGAGAGTGGAGAAGACCAAATGGAATGTCATGATCATTGGTGATGGTATGAATGCAACAATTGTATCTGGAAGCCTTAACTTTGTGGATGGCACCCCAACATTTTCAACTGCAACATTTGCTGTATTTGGGAAGAATTTCATGGCTAAGGATATGGGATTTCGTAACACAGCTGGTGCAGAGAAGCACCAAGCAGTGGCACTAATGACAAGCGCTGATCAAGCTATTTTCTATAGGTGTCAGATTGATGCATATCAGGACACTCTCTATGCTCATTCAAATCGCCAATTCTATAGGGAATGCAACATCTATGGAACAGTTGATTTCATTTTTGGCAACTCTGCAGTTGTCTTACAAAACTGCAACATTTTGCCAAAGTTGCCTATGCAGGGCCAACAGAACACAATCACAGCACAAGGCAAAACTGACCCTAACATGAACACAGGAATTTCAATTCAAAATTGTAACATTTCACCCTTTGGGAACTTGAGTTCTGTCCAAACATACCTTGGAAGACCCTGGAAGAATTACTCAACCACAGTGTTTATGCAATCCACATTGGGAAGTTTCATTAACCCAAATGGATGGTTACCTTGGGTAGGGAACTCAGCACCAGATACCATATTTTATGCAGAATTTCAGAATGTTGGACCAGGTGCTTCAACAAAGAATAGGGTCAAGTGGAAGGGTGTGAGAAGCATTACCAAAAAACAAGCTAGCAAGTTTACAGTGAAGTCCTTTCTTTCAGGAGACAGATGGATTCCTGCTTCGGGTGCTCCCTTTAAACCTTCTATGTGA 1758 0.4152 MSSLKAYGKVDEADQAMLEVRRKTRKRITIISLSTIVLIGVVCAAVFGTIAHNNGHDDDDNNNAQSLSSNSVVKAVCDVTLYKDSCYSSLSPLVHSGHVQPQELFLLSIQVAFNEVSRAVEYFSEQGDFKGLSVDNRTKEALKNCGDLLGLAADHLNSSLSSGEKSSLLDVLEDLKTWLSASVLNDYSCAETAGTYQQTCIDGFDEAGEALKSSVVSNLKNSTEFTSNSLAIITWLNNAATTVNLRRLLTLPNQNEEPNWLHSKDRKLLQTDDLKKKADIVVAKDGSGKYKTISDALKHVPEKSDKRTVIYVKRGTYYENVRVEKTKWNVMIIGDGMNATIVSGSLNFVDGTPTFSTATFAVFGKNFMAKDMGFRNTAGAEKHQAVALMTSADQAIFYRCQIDAYQDTLYAHSNRQFYRECNIYGTVDFIFGNSAVVLQNCNILPKLPMQGQQNTITAQGKTDPNMNTGISIQNCNISPFGNLSSVQTYLGRPWKNYSTTVFMQSTLGSFINPNGWLPWVGNSAPDTIFYAEFQNVGPGASTKNRVKWKGVRSITKKQASKFTVKSFLSGDRWIPASGAPFKPSM. 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09710 585 FunFam Pectinesterase 69 237 - -
Seca4g09710 585 SMART PMEI_2 68 232 IPR006501 GO:0004857
Seca4g09710 585 Pfam Plant invertase/pectin methylesterase inhibitor 72 232 IPR006501 GO:0004857
Seca4g09710 585 ProSitePatterns Pectinesterase signature 2. 423 432 IPR033131 -
Seca4g09710 585 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 238 IPR035513 -
Seca4g09710 585 Gene3D - 274 585 IPR012334 -
Seca4g09710 585 FunFam Pectinesterase 273 585 - -
Seca4g09710 585 PANTHER PECTINESTERASE 39 575 - -
Seca4g09710 585 Pfam Pectinesterase 279 571 IPR000070 GO:0030599|GO:0042545
Seca4g09710 585 CDD PMEI-like_3 75 236 - -
Seca4g09710 585 NCBIfam pectinesterase inhibitor domain 67 236 IPR006501 GO:0004857
Seca4g09710 585 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 71 236 IPR035513 -
Seca4g09710 585 SUPERFAMILY Pectin lyase-like 277 581 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09710 Seca-Chr4 228032236 228035287 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09710 7 585 Carbohydrate Esterase AT3G10710 56.947 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09710 - - gmx:100816529 931.013