Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09708 ATGTCCTTCTTTCCCTTCCTTCTCTCCCTCTTCCTCCTTCTACCCTTATTCCTAGCTCAAGCTCCATCACCAACACATTCCCCTTCTCCACCTTCTTCCTCAGCAGCATGCAAGTCCACATTATACCCAAAACTCTGCCGTTCCATTCTTTCCTCCATACGCTCCTCACCATCCGACCCCTACCGCTTAGGCAAATTCTCCATCAAACAAAGCCTCAAACAAGCCAAGAAACTAGCCAAAGTCTTCAACGACTTCCTCAACAAGCATCGCTCTTCTTCCCTCAACCACGCAGAGGTTGCAGCACTCGAAGACTGCGGTGAGTTGAACAACCTCAACGTGGATTACTTGGAGACAGTGTATACCTTGGTGAAATCTGGAGATACAGCATCATTCAACAGTACTGATGAGTTAGTTGAAACTGTTGAGACGTATCTGAGTGCTGTGGCAACTAACCACTACACTTGCTATGATGGGTTGGTTGTGACGAATAGCAACATTGCTAAGGCACTTGCGGTGCCTCTTAGCAATGTGACGGAACTGTATAGTGTGTCACTTGGGTTGGTGACGCAGGCTCTCAAGAAGAATATGAAGAAGCATAAGACCCGTAAACATGGTCTTCCTACTAAGGCTTATAAAGTCAGGCAGCCACTTGAGAAGCTCATCAAGCTTCTTCACAAAAAGTATAGTTGCAATGAATCATCCAATTGTACTAGAAGCGAAAGGATTCTTAAAGAAAGCGAAAACAAAGGAATTCTATTGAATGATTTTGTGATTGTGAGCCTTGATGGCACTGGCAACTTCACTTCCATTGGAGATGCTGTTTCTGCTGCACCTAACAACACAAAGCCCCAAGATGGCTATTTTCTTATCTATGCCAAAGAAGGAAACTATGAGGAATATGTCATTATTCCCTCACAGAAAAAGAACATCTTGCTAATTGGGGATGGTATCAACAAAACTTGCATCACAGGAAATCACAGTGTTGTAGATGGTTGGACAACTTTCAATTCTTCAACCTTTGCTGTCACTGGAGAAAGATTCATTGCAGTGGATGTAACATTCAGAAACACAGCAGGACCTCAAAAGCATCAAGCAGTAGCTGTGAGGAACAATGCTGACCTATCCACATTCTATCGTTGCAGTTTTGAAGGATACCAAGACACTCTCTATGTTCACTCTCTAAGGCAATTCTATAAGGAATGTGATATCTATGGCACTGTAGATTTCATTTTTGGCAATGCTGCTGTGGTATTTCAAGACTGTAACATCTATGCCAGAAAACCAATGCCAAACCAGAAGAATGCTGTCACAGCACAAGGCAGAACTGATCCAAACCAGAACACTGGAATTTCAATACAAAATTGCAGGATTGATGCTGCACCTGACTTGGCTGAAGATTTGAATTCCACTTTAAATTACTTAGGAAGGCCATGGAAAGAGTATTCAAGGACTGTGTATATGCAATCATATATTGGTGATCTAATTTATCCTTCTGGGTGGTTAGAGTGGAATGGCACAACTGGGTTAGATACCCTCTTTTATGGTGAATTTGATAACCATGGACCTGGTGCTGATACCAACAATAGGGTACGTTGGCATGGTTACAATCTGTTGAATGCTACTCAAGCTTGTAACTTTACTGTCCTTAATTTTACCTTGGGGGATACATGGCTTCCAGACACTGACATACCCTACTCTGCAGGACTCTAG 1710 0.4275 MSFFPFLLSLFLLLPLFLAQAPSPTHSPSPPSSSAACKSTLYPKLCRSILSSIRSSPSDPYRLGKFSIKQSLKQAKKLAKVFNDFLNKHRSSSLNHAEVAALEDCGELNNLNVDYLETVYTLVKSGDTASFNSTDELVETVETYLSAVATNHYTCYDGLVVTNSNIAKALAVPLSNVTELYSVSLGLVTQALKKNMKKHKTRKHGLPTKAYKVRQPLEKLIKLLHKKYSCNESSNCTRSERILKESENKGILLNDFVIVSLDGTGNFTSIGDAVSAAPNNTKPQDGYFLIYAKEGNYEEYVIIPSQKKNILLIGDGINKTCITGNHSVVDGWTTFNSSTFAVTGERFIAVDVTFRNTAGPQKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYKECDIYGTVDFIFGNAAVVFQDCNIYARKPMPNQKNAVTAQGRTDPNQNTGISIQNCRIDAAPDLAEDLNSTLNYLGRPWKEYSRTVYMQSYIGDLIYPSGWLEWNGTTGLDTLFYGEFDNHGPGADTNNRVRWHGYNLLNATQACNFTVLNFTLGDTWLPDTDIPYSAGL. 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09708 569 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Seca4g09708 569 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 191 IPR035513 -
Seca4g09708 569 Pfam Plant invertase/pectin methylesterase inhibitor 35 186 IPR006501 GO:0004857
Seca4g09708 569 SMART PMEI_2 28 187 IPR006501 GO:0004857
Seca4g09708 569 NCBIfam pectinesterase inhibitor domain 6 190 IPR006501 GO:0004857
Seca4g09708 569 PANTHER PECTINESTERASE 17 559 - -
Seca4g09708 569 Gene3D - 253 569 IPR012334 -
Seca4g09708 569 CDD PMEI-like_3 35 189 - -
Seca4g09708 569 FunFam Pectinesterase 252 569 - -
Seca4g09708 569 Pfam Pectinesterase 257 554 IPR000070 GO:0030599|GO:0042545
Seca4g09708 569 SUPERFAMILY Pectin lyase-like 255 568 IPR011050 -
Seca4g09708 569 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 190 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09708 Seca-Chr4 228028380 228032128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09708 36 569 Carbohydrate Esterase AT3G10720 62.407 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09708 K01051 - gmx:100808277 888.256