Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09698 ATGGTAGTGACTGGTAAAATGGGGATCCAAACTATGGGATCTCAAGGTGGTGGAGATAGTAATGGAAAACGGTCACAGTTCCAGCCTTTGGTGCGGCAAAACTCAATGTACAGTCTCACACTTGATGAGGTTCAGAGTCAATTAGGTGATTTAGGGAAGCCGCTAAGTAGTATGAATCTTGATGAGCTTTTAAAAAATGTATGGACTGTTGAGGCAAGCCAGTCCACAGGTATAGACAATGAGGGCACAGCACAAGCTAGTCAAGCTGCTCTGCAGCGTCAAGCTAGTCTGTCATTAACTGGTGCACTAAGCAAGAAGACTGTAGATGAGGTTTGGAGAGATATCCAACAAAACAAAGACAATGAGGAGAAGAAGTCACGAGACAGACAACCTACTTTAGGAGAGATGACATTGGAGGATTTCTTGGTGAAAGCAGGTATTGTTGCCGAAGCATCTTCTAATAAAAGTGTAGCAGTACCACAGTTTCCTCCCCAAGGTCAGTGGATACAGTATGCACAACCACAATATCAGCATCCACAACAAAGTTTAATGGGGATTTATATGCCTAGCCAAGGTATAGCACAGCCATTACACATGGGGGCTGGTGCTTCATTGGATGTTCCATTTGCCGATAGTCAGGTAGCATTGCCTTCACCTCTAATGGGAACAGTGTCAGATACACAGACACCTGGAAGAAAAAGGAGCACTCCAGAGGACATGATGGAGAAGACTGTTGAGAGGAGGCAGAAAAGGATGATAAAAAATCGAGAATCTGCTGCTCGTTCAAGAGCAAGGAAACAGGCATACACAAATGAATTGGAGCAAAAAGTGTCACGTTTGGAAGAGGAAAATGAAAGGCTGAGGAAACGAAAGGAGCTAGAGAAGATGTTGCCATGTGCACCACCTCCTGAACCTAGATATCAACTTCGCCGAATAGCATCAGCTCCATTCTGA 954 0.4444 MVVTGKMGIQTMGSQGGGDSNGKRSQFQPLVRQNSMYSLTLDEVQSQLGDLGKPLSSMNLDELLKNVWTVEASQSTGIDNEGTAQASQAALQRQASLSLTGALSKKTVDEVWRDIQQNKDNEEKKSRDRQPTLGEMTLEDFLVKAGIVAEASSNKSVAVPQFPPQGQWIQYAQPQYQHPQQSLMGIYMPSQGIAQPLHMGAGASLDVPFADSQVALPSPLMGTVSDTQTPGRKRSTPEDMMEKTVERRQKRMIKNRESAARSRARKQAYTNELEQKVSRLEEENERLRKRKELEKMLPCAPPPEPRYQLRRIASAPF. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09698 317 SUPERFAMILY Leucine zipper domain 247 292 IPR046347 GO:0003700|GO:0006355
Seca4g09698 317 MobiDBLite consensus disorder prediction 1 27 - -
Seca4g09698 317 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 245 297 - -
Seca4g09698 317 SMART brlzneu 243 311 IPR004827 GO:0003700|GO:0006355
Seca4g09698 317 MobiDBLite consensus disorder prediction 232 297 - -
Seca4g09698 317 Coils Coil 263 297 - -
Seca4g09698 317 Pfam bZIP transcription factor 247 293 IPR004827 GO:0003700|GO:0006355
Seca4g09698 317 CDD bZIP_plant_BZIP46 247 301 - -
Seca4g09698 317 MobiDBLite consensus disorder prediction 218 317 - -
Seca4g09698 317 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 245 290 IPR004827 GO:0003700|GO:0006355
Seca4g09698 317 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 250 265 IPR004827 GO:0003700|GO:0006355
Seca4g09698 317 MobiDBLite consensus disorder prediction 8 27 - -
Seca4g09698 317 Gene3D - 245 298 - -
Seca4g09698 317 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 31 316 IPR043452 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09698 Seca-Chr4 227833928 227839387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09698 28 317 bZIP Transcription Factor Family AT3G56850 56.352 1.40e-98 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca4g09698 bZIP_1 7e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09698 K14432 - gmx:100101875 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09698 4 227833928 227839387 Seca4g09698 4 227833928 227839387 ECH