Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09697 ATGGGATATGAAACCAGAAGGCTCTCAGATGAGTATGAGGTTTCAGATGTTCTAGGAAGAGGTGGATTTTCTGTTGTCAGAAAAGGTACAAAAAAATCAAGCAGTGAGAAAACCTTAGTAGCCATCAAAACACTAAGAAGGTTAGGTGCCTCTAATAACAACCCTTCTGCTGGTTTACCAAAAACAAAAGGTGGAGAGAAGAGCATAGCAAATATGATGGGGTTCCCCACATGGAGACAAGTTTCAGTCTCAGATGCCTTGTTGACCAATGAGATTCTTGTCATGAGGAGGATAGTGGAAAATGTTTCACCTCACCCCAATGTGATTGATCTCTATGATGTGTATGAGGACTCAAATGGGGTTCATCTTGTGCTTGAGCTTTGTTCTGGTGGGGAATTGTTTGATAGGATTGTGGCACAAGATAGGTACTCAGAGACTGAAGCTGCAGCTGTGGTTCGCCAGATAGCAGCAGGATTAGAGGCTATTCATAGAGCTAACATTGTTCATAGGGACTTGAAGCCTGAGAATTGCCTTTTTTTGGATACCAGGAAGGACTCTCCTCTCAAGATCATGGACTTTGGGTTGAGTTCTGTTGAAGAATTTACTGACCCTGTTGTTGGTTTGTTTGGATCCATTGATTATGTTTCACCAGAGGCTCTTTCTCAAGGAAAGATAACTACTAAGAGTGACATGTGGTCTCTAGGAGTAATTCTATATATCTTACTCTCTGGGGTATCCACCTTTCATTGCTCCGTCTAA 759 0.4203 MGYETRRLSDEYEVSDVLGRGGFSVVRKGTKKSSSEKTLVAIKTLRRLGASNNNPSAGLPKTKGGEKSIANMMGFPTWRQVSVSDALLTNEILVMRRIVENVSPHPNVIDLYDVYEDSNGVHLVLELCSGGELFDRIVAQDRYSETEAAAVVRQIAAGLEAIHRANIVHRDLKPENCLFLDTRKDSPLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITTKSDMWSLGVILYILLSGVSTFHCSV. 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09697 252 SMART serkin_6 12 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09697 252 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Seca4g09697 252 Gene3D Transferase(Phosphotransferase) domain 1 133 251 - -
Seca4g09697 252 Gene3D Phosphorylase Kinase; domain 1 76 132 - -
Seca4g09697 252 Pfam Protein kinase domain 12 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09697 252 Gene3D Phosphorylase Kinase; domain 1 7 52 - -
Seca4g09697 252 SUPERFAMILY Protein kinase-like (PK-like) 5 249 IPR011009 -
Seca4g09697 252 ProSiteProfiles Protein kinase domain profile. 12 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09697 252 PANTHER SERINE/THREONINE-PROTEIN KINASE 7 248 - -
Seca4g09697 252 ProSitePatterns Protein kinases ATP-binding region signature. 18 43 IPR017441 GO:0005524
Seca4g09697 252 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 3 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09697 Seca-Chr4 227822862 227827683 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09697 1 248 EF-hand Containing Proteins AT4G09570 38.306 1.30e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Seca4g09697 Pkinase 2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09697 K13412 - gmx:100780887 433.721