Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09691 ATGAAGAGGTCTCCACCATCTTCTTGTTCATCATCATCATCTTCTGTTGGGTTTGAAACTCCTATTATTCAATCAGAGAAAAGAAGGGCTAAACATCCAAGAAGGAATCTCAAGTCCTCACAGAAATGTAAGCAGAACCAAACCACTGGAAGCAGAAGAAGCTCCATTTACAGAGGAGTTACAAGGCATAGGTGGACAGGAAGGTTTGAAGCTCACCTATGGGATAAGAGTTCCTGGAACAACATTCAGAACAAGAAGGGACGACAAGTTCTTATAGGGGCATATGATACTGAAGAAGCAGCAGCTCGTACCTATGATCTTGCAGCACTCAAGTACTGGGGGAAGGATGCAACCTTGAATTTCCCTATAGAAACATATTCAAAGGACCTTGAGGAAATGGACAAGGCATCAAAAGAAGAATACTTGGCTTCTTTGCGGCGTCAAAGCAGTGGTTTTTCTAGGGGCATTTCAAAGTACCGTGGTGTGGCCAGGCATCACCATAATGGCCGCTGGGAAGCTCGGATAGGAAGAGTGTGTGGAAACAAGTACCTCTACTTGGGGACATATAAAACTCAGGAGGAGGCAGCTGTGGCATATGACATGGCAGCAATAGAGTACAGAGGACTCAATGCAGTGACCAATTTTGACATAAGCAATTATATTGACAAAATAAAGAAAAATGACCAATCCCAACAAACAGAAGCACAGGCAGAAATAGCTCCTAACTCCTCTGAGTCTGAAGAAGCAGAAGTAGAAGTAGAACAGACAGCTACACCCCCACCTGAGAATCTGCACATACAACCACAAGAGCACCAATTTCAACACACTCATGTTCCTCCAAACGAGGAATCCTCACTAGTTACTGTTATGGACCATGTTCTTGAGCAGGACTTACCCTGGAGCTTCATGTATACAGGGCTATCACAGTTTCAAGACCCTGAATTGGCTTTGAGCAAACCTGAGGATTTAATGAGCATGTTTGATGGTGCAGGCTTTGAAGATGACATTAATTTTTGGCTCAGCACTGAACCTGGTGAGAGTGATATTAATATCAGCGCAGTTTTGGATAGTATTGACCCTGGAGATACAAATGGGGCTGCTGGAACCATGGTGGTTGATAACCAGCAAAAGCAGCTATTATCCTTATCTTCTTCACCATCATCAACAACAACTACAATTTCTTGTAACTATTCTCTATGA 1200 0.4317 MKRSPPSSCSSSSSSVGFETPIIQSEKRRAKHPRRNLKSSQKCKQNQTTGSRRSSIYRGVTRHRWTGRFEAHLWDKSSWNNIQNKKGRQVLIGAYDTEEAAARTYDLAALKYWGKDATLNFPIETYSKDLEEMDKASKEEYLASLRRQSSGFSRGISKYRGVARHHHNGRWEARIGRVCGNKYLYLGTYKTQEEAAVAYDMAAIEYRGLNAVTNFDISNYIDKIKKNDQSQQTEAQAEIAPNSSESEEAEVEVEQTATPPPENLHIQPQEHQFQHTHVPPNEESSLVTVMDHVLEQDLPWSFMYTGLSQFQDPELALSKPEDLMSMFDGAGFEDDINFWLSTEPGESDINISAVLDSIDPGDTNGAAGTMVVDNQQKQLLSLSSSPSSTTTTISCNYSL. 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09691 399 FunFam AP2-like ethylene-responsive transcription factor 157 218 - -
Seca4g09691 399 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Seca4g09691 399 PRINTS Ethylene responsive element binding protein signature 198 218 IPR001471 GO:0003700|GO:0006355
Seca4g09691 399 FunFam AP2-like ethylene-responsive transcription factor 55 124 - -
Seca4g09691 399 Gene3D AP2/ERF domain 56 124 IPR036955 GO:0003700|GO:0006355
Seca4g09691 399 Gene3D AP2/ERF domain 157 218 IPR036955 GO:0003700|GO:0006355
Seca4g09691 399 MobiDBLite consensus disorder prediction 237 265 - -
Seca4g09691 399 Pfam AP2 domain 56 114 IPR001471 GO:0003700|GO:0006355
Seca4g09691 399 Pfam AP2 domain 157 208 IPR001471 GO:0003700|GO:0006355
Seca4g09691 399 SUPERFAMILY DNA-binding domain 55 124 IPR016177 GO:0003677
Seca4g09691 399 ProSiteProfiles AP2/ERF domain profile. 158 216 IPR001471 GO:0003700|GO:0006355
Seca4g09691 399 CDD AP2 157 218 IPR001471 GO:0003700|GO:0006355
Seca4g09691 399 SUPERFAMILY DNA-binding domain 157 218 IPR016177 GO:0003677
Seca4g09691 399 MobiDBLite consensus disorder prediction 1 56 - -
Seca4g09691 399 MobiDBLite consensus disorder prediction 1 21 - -
Seca4g09691 399 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 34 274 - -
Seca4g09691 399 ProSiteProfiles AP2/ERF domain profile. 56 122 IPR001471 GO:0003700|GO:0006355
Seca4g09691 399 SMART rav1_2 158 222 IPR001471 GO:0003700|GO:0006355
Seca4g09691 399 SMART rav1_2 56 128 IPR001471 GO:0003700|GO:0006355
Seca4g09691 399 CDD AP2 55 123 IPR001471 GO:0003700|GO:0006355
Seca4g09691 399 MobiDBLite consensus disorder prediction 40 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09691 Seca-Chr4 227786955 227791810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09691 23 279 AP2-EREBP Transcription Factor Family AT5G57390 50.000 5.21e-85 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Seca4g09691 AP2 4.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09691 - - gmx:100789774 593.578