Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09674 ATGGACACGAAAAACCCATCTGAGAATTCTTCCAATTTTGAATCTTTCATGCATAATTCATCGTCACGTAGAAGTGCCATGTCCATTCAGTCTAAGAGTTCTGGCAGGAATTCAACCCGGGAAGTGACTTTTGACCATTCAGGATCCAAGCCTGTGAGGTATGGGTCAAAGGGTGTTGATTCTGAAGGTTTCAGCATGTCCCAGAAGGAAATCAGTGATGAGGATGCTAGGTTGGTTTATGTTGATGATCCTCGGAGGACAAACGAGAGGTTTGAATTTGCTGGTAATTCGATTCGTACTGGGAAGTACTCCATCCTCACCTTTCTGCCTAAGAATTTGTTTGAACAGTTTCATAGAGTTGCTTACATTTATTTCCTTATAATTGCCATTCTTAATCAGCTCCCTCAGCTAGCTGTTTTTGGAAGGGGTGTTTCTATTTTGCCATTGGCCTTTGTTCTTCTTGTTACTGCTGTGAAGGATGCATATGAGGACTGGAGAAGGCACAGATCAGACAAAGTTGAGAACAACAGGTTAGCATTTGTTTTGGTTAATGGTGAGTTCCAAGAGAAGAAATGGAAAGATATTAAAGTTGGTGAGATCATTAAAATCAGTGCAAATGAAGCCATTCCTTGTGACTTTGTGTTGCTCTCAACTAGTGACCCTACTGGGGTTGCTTATGTGCAGACTCTTAATCTAGATGGAGAGTCTAATTTGAAGACTAGGTATGCAAAACAAGAGACTCAATCTAAGTTTCATGAAAAGGAGAGGTTCAATGGATTGATTAAGTGTGAGAAACCCAATAGAAATATATATGGGTTTCAGGGTAACATGGAAATTGATGGAAAGAGGTTGTCTCTTGGATCCTCCAATATTGTCCTTAGAGGTTGTGAACTCAAGAACACTCATTGGGCACTTGGTGTTGCTGTGTATTGTGGCTGTGAGACCAAAGCTATGCTCAACAGCTCAGGAGCTCCATCTAAGAGGAGCCGTCTTGAGACTCGGATGAACTCTGAGATCATCATGCTTTCTTTCTTTCTTGTAGCTCTGTGTACAGTTACCTCAGTTTGTGCTGCTGTTTGGTTAAAGCGCCACAAGAGTGAGTTGAATCTCTTGCCTTACTATAGGAAACTGGATGTTTCAGAGGGGAAAGAGGAAAGCTATGAATATTATGGATGGGGAATGGAAATCCTTTTCACATTCCTCATGTCAGTTATAGTGTTCCAGGTCATGATCCCCATATCCTTGTACATTTCTATGGAGCTTGTCCGTGTCGGTCAGGCCTACTTCATGATCAAAGACTCCAGAATGTATGATGAGACAACAAATTCAAAATTCCAGTGCAGGGCCTTGAATATTAATGAAGATTTAGGGCAAATTAAATATGTATTTTCTGACAAAACTGGTACACTAACTGAGAACAAGATGGAGTTTCAATGCGCAAGCATTTGGGGGTTTGATTACAGTTCTACAAAAAGCAGTCTTCACAATGAGCAAATTGAATACTCTGTTCAAGTGGATGGAAAGGTCTTGAAGCCAAAGATGAAGGTGAAAGTTAATCCAGAGCTTTTGCAATTAGCAAAAAGTGGATTTTCAAATATAGAGGGAAAACGAATTTATGATTTCTTTCTAGCCCTGGCAGCATGCAATACTATTGTGCCTCTTATTATTGACACATCTGACCCTACAGTCAAGCTGATAGATTATCAAGGGGAATCACCAGATGAACAAGCATTGGCATATGCTGCTGCTGCCTATGGTTTTATGCTTATAGAGCGAACCTCGGGTTACATAGTCATTGATATTCATGGAGAAAGACACAGGTTCAATGTCTTGGGTTTGCATGAATTTGATAGTGATCGGAAAAGGATGTCAGTTATATTGGGGTACAATGACAACTCTGTGAAACTTTTTGTCAAAGGGGCAGATACATCCATGCTTAGTGTGATAGATAAATCATTGAACACAGACATAATAAAAGCAACTGAAGCCCATCTTCACTCTTATTCTTCCCTGGGTTTGAGGACACTTGTTATTGGGATGCGGGACTTGAATGCTTCAGAATTTGAGCAATGGCACTTTACCTTTGAGGCAGCAAGTACTGCTTTGATTGGTAGGGCTGCTATGCTTCGCAAGGTTGCTATCAATATAGAGAACAATCTCTGCATATTGGGTGCAACTGCTATTGAAGATAAACTGCAGCAAGGTGTGCCAGAATCTATCGAGTCTCTAAGGAGTGCAGGTATTAAAGTATGGGTGTTGACTGGAGACAAACAGGAAACTGCCATATCAATTGGATACTCCTCAAAGCTCCTCACGAGCAACATGACTCAAATTATACTTAAAAGCAACAATAGAGAGTCATGTAGAAGAAGTTTACAAGACGCCCTTGTCATGTCTGAAAAAAACATGGCTCAATCTGCAGTTACCAACTATCCTGAAGGAAGTTCTGATGTTGTTACAACTACAATAGCCTTGATTATTGATGGTACCAGCCTTGTATACATTCTTGACAGTGAACTTGAAGATGAGCTCTTTCAACTTGCAAGTAGATGTTCTGTTGTTCTGTGTTGTCGAGTGGCTCCATTGCAAAAGGCTGGAATTGTTGCCCTAGTGAAGAAAAGGACAGCTGACATGACTCTAGCCATTGGCGATGGGGCTAATGATGTATCAATGATCCAAATGGCTGATGTTGGAGTTGGCATCAGTGGGCAGGAGGGTAGGCAAGCTGTAATGGCTTCAGATTTTGCAATGGGGCAGTTTAGGTTTTTAGTTCCTCTCTTATTGATACATGGACACTGGAATTACCAAAGACTGGGCTACATGATACTGTACAATTTTTACAGAAATGCCGTCCTTGTTCTTGTCCTATTTTGGTATGTGCTCTTCACTGCCTTCACTTTGACAACTGCTATAAATGAATGGAGTAGCATGTTGTATTCAATAGTCTACACTGCATTGCCAACTATTGTTGTCGGTATTCTTGACAAGGATCTTAGTAAAAGGACTCTCCTAAAGTATCCTCAGCTTTACGGGGCTGGGCAGAGACATGAGGCCTACAACAAAAAGTTATTTTGGTTGACAATGGCTGATACTTTGTGGCAAAGCATTGTTGTCTTCTTTGCTCCTCTCTTTGCATATTGGGGAAGCTCTGTAGATGTAGCAAGCATAGGAGATCTTTGGACTCTTTCAGTAGTTATTATGGTTAATTTGCATTTGGCAATGGATGTCATCAGGTGGAATTGGATTATTCATGCAGCCACTTGGGGGTCTGTCATTGCAACTTTCATTTGTGTTATGGTTATTGATGCTATACCGGCATTTCCTGGTTACTGGGCCATCTTTCACACTGCAGGGACTGGACTGTTCTGGCTATGTTTGCTGGGAATTGTGATAGCAGCATTGCTTCCACGTTTTGTTGTAAAATTTGTTTATCAATATTATTTTCCCAATGATATTCAGATTTCAAGAGAAGCTGAGAAGTTTGGGAATGTAAGGGTCAATGAAGGTGGACAGATAGAAATGCATTCCATCTCAGATGGTCCACCAAGATGA 3552 0.4088 MDTKNPSENSSNFESFMHNSSSRRSAMSIQSKSSGRNSTREVTFDHSGSKPVRYGSKGVDSEGFSMSQKEISDEDARLVYVDDPRRTNERFEFAGNSIRTGKYSILTFLPKNLFEQFHRVAYIYFLIIAILNQLPQLAVFGRGVSILPLAFVLLVTAVKDAYEDWRRHRSDKVENNRLAFVLVNGEFQEKKWKDIKVGEIIKISANEAIPCDFVLLSTSDPTGVAYVQTLNLDGESNLKTRYAKQETQSKFHEKERFNGLIKCEKPNRNIYGFQGNMEIDGKRLSLGSSNIVLRGCELKNTHWALGVAVYCGCETKAMLNSSGAPSKRSRLETRMNSEIIMLSFFLVALCTVTSVCAAVWLKRHKSELNLLPYYRKLDVSEGKEESYEYYGWGMEILFTFLMSVIVFQVMIPISLYISMELVRVGQAYFMIKDSRMYDETTNSKFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGFDYSSTKSSLHNEQIEYSVQVDGKVLKPKMKVKVNPELLQLAKSGFSNIEGKRIYDFFLALAACNTIVPLIIDTSDPTVKLIDYQGESPDEQALAYAAAAYGFMLIERTSGYIVIDIHGERHRFNVLGLHEFDSDRKRMSVILGYNDNSVKLFVKGADTSMLSVIDKSLNTDIIKATEAHLHSYSSLGLRTLVIGMRDLNASEFEQWHFTFEAASTALIGRAAMLRKVAINIENNLCILGATAIEDKLQQGVPESIESLRSAGIKVWVLTGDKQETAISIGYSSKLLTSNMTQIILKSNNRESCRRSLQDALVMSEKNMAQSAVTNYPEGSSDVVTTTIALIIDGTSLVYILDSELEDELFQLASRCSVVLCCRVAPLQKAGIVALVKKRTADMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRFLVPLLLIHGHWNYQRLGYMILYNFYRNAVLVLVLFWYVLFTAFTLTTAINEWSSMLYSIVYTALPTIVVGILDKDLSKRTLLKYPQLYGAGQRHEAYNKKLFWLTMADTLWQSIVVFFAPLFAYWGSSVDVASIGDLWTLSVVIMVNLHLAMDVIRWNWIIHAATWGSVIATFICVMVIDAIPAFPGYWAIFHTAGTGLFWLCLLGIVIAALLPRFVVKFVYQYYFPNDIQISREAEKFGNVRVNEGGQIEMHSISDGPPR. 1184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09674 1183 NCBIfam phospholipid-translocating P-type ATPase 93 1157 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Seca4g09674 1183 FunFam Phospholipid-transporting ATPase 151 320 - -
Seca4g09674 1183 Pfam Cation transport ATPase (P-type) 571 647 - -
Seca4g09674 1183 FunFam Phospholipid-transporting ATPase 567 700 - -
Seca4g09674 1183 MobiDBLite consensus disorder prediction 1 61 - -
Seca4g09674 1183 Pfam Phospholipid-translocating P-type ATPase C-terminal 910 1150 IPR032630 -
Seca4g09674 1183 SFLD p-type atpase 446 933 IPR044492 -
Seca4g09674 1183 Gene3D - 719 922 IPR023214 -
Seca4g09674 1183 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 70 1160 - -
Seca4g09674 1183 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 469 735 IPR023299 GO:0000166
Seca4g09674 1183 NCBIfam HAD-IC family P-type ATPase 853 968 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g09674 1183 NCBIfam HAD-IC family P-type ATPase 395 484 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g09674 1183 SUPERFAMILY HAD-like 450 923 IPR036412 -
Seca4g09674 1183 ProSitePatterns E1-E2 ATPases phosphorylation site. 465 471 IPR018303 -
Seca4g09674 1183 Pfam Phospholipid-translocating ATPase N-terminal 79 144 IPR032631 -
Seca4g09674 1183 SFLD Haloacid Dehalogenase 446 933 - -
Seca4g09674 1183 FunFam Phospholipid-transporting ATPase 719 922 - -
Seca4g09674 1183 SUPERFAMILY Calcium ATPase, transduction domain A 176 317 IPR008250 -
Seca4g09674 1183 SUPERFAMILY Calcium ATPase, transmembrane domain M 93 1149 IPR023298 -
Seca4g09674 1183 Gene3D - 150 320 - -
Seca4g09674 1183 MobiDBLite consensus disorder prediction 1 45 - -
Seca4g09674 1183 CDD P-type_ATPase_APLT_Dnf-like 95 1042 - -
Seca4g09674 1183 Gene3D - 566 698 IPR023299 GO:0000166
Seca4g09674 1183 PRINTS P-type cation-transporting ATPase superfamily signature 463 477 - -
Seca4g09674 1183 PRINTS P-type cation-transporting ATPase superfamily signature 882 901 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09674 Seca-Chr4 227480408 227487498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09674 25 1183 Primary Pumps ATPases AT5G04930 70.482 0.0 1727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09674 K14802 - gmx:100784988 2012.65