Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09671 ATGGCAAACCCAGTTTCCCATTCATATCTGCTCCTTTTAATCTTGTTTCTTACCATCCATCTTTCAGAAGAGTTACAATTTTCTCAGTATCAGACACTTCTCAAAGTCCAGCAACTTCTTGGTTACCCTTCAGCACTAGGCAGCTACAGCAGCAACACAGATAATTGCAACATTGAACCTACCCCATCTTTGACACTAGTGTGCTATGAGGACAGCTTGACACAGCTGCATGTTGTTGGTAACAAGGGGTTTACCTCATTGCCTCAGAACTTCTCCTCAGACACTCTATTTGCCACACTAGGCAGTCTATCAAGCTTGAAAGTCCTTTCTTTGGTTTCTCTTGGTCTCTGGGGGCCTCTACCTGAAAGCATTGCTCAATTGTCTTCACTGGAAATACTTAACATTAGCTCAAATTACTTCAATGGAGCCATCCCAGTCCAAGTTTCACATCTGAAGAACCTGCAGTCTGTGGTACTTGATGATAACAACTTCAATGGTGAAATTCCCAACTGGGTAGGCTCCCTTCAAGGTTTGGCTGTGCTTAGTTTGAAGAATAATTGGTTTAGTGGGAACCTGCCAACTTCAGTGAAGTCCCTTGTTACTCTGAGAGTATTAGATCTGTCAAATAATCAGCTATCTGGGGAACTACCTAATCTTCATAATTTGTCAAACCTTCAAGTTCTTCATTTGGAAAACAACACATTTGGACCTCATTTTCCTTCTTTGCCTACCAAGTTAGTTTCCCTTGTGCTTAGAAACAATAGCTTTAAGCTTAGTGTCCCTTCTAATATAAGTTCTTTCTATCAGCTCCAAAAGCTGGACCTTTCATTCAATGGCTTTGTGGGGCCATTTCCTCCATCCTTATTGTCACTGCCTTCCCTCAATTACCTTGATATCTCTTCAAATAAGTTCACTGGTTTGCTTTTCAAGAATTTCTCTTGCAATGATGATCTCCACTTTGTGAATTTATCTTCAAATCTTTTGAAAGGGGAACTTCCCACTTGTTTAAGACCAAAGACAAGGGTTGTTTTGTATACTAGAAACTGTTTATCAAATGAGAACCAAGATCAGCTCCCTTCCACCTTCTGCAGCAATGAGGCTCTGGCAGTGAATGTCACACCCCAACAACAGAAGCATAAGAGAACAACAGGTACAACAGTGCTTGTATCAAGTATGGGAGGTGTTGTTGGAGTGCTGATTGTTGGTGTGGTTATCTTGGTTGTTAGCCAGGTTCATAAAAAACATGTTGTGAAAACACCTTCAAAGTCCACATTGGAGAATGTTATTAGTCAGGCACAGAATGAGGATGAAGTGAAAACTCCTAAAAGGTCCATAATGGAGCATATCATCAGCAGGGTTCCTGACAAACATGCTGTGAAAACACTATCAAGATCTATAAAGGAGCAAGTCATGAGCCGAGTGAATAACAAACGTATTGTGAAGACTCCTACAAGGTCCATAATAGAGCATGTATCATCAGTTAACACTGCAAAACTACTCACTGATGCAAGATATATATCTCAAACAATGAAGATGGGAGCTAGCTTTCCTGCTTATAGGACCTTTCCTTTGGACGAACTTAAGGAAGCTACAAATAATTTTGATGCATCATGTTTCATAAGTGAAGGTCCACATGGTCAGATATACAAAGGGGTGCTCTCTGATGGAATGCATATTGCTATTAGAGGCATGAAAATAAGAAAGAAACACAGCCCTCAGACCTATATGCACCATGTTGAGTTGATTTCAAAACTCAGGCATTCACACTTGGTTAGTGCTCTTGGGCATTCTTTTGAGTGCAACCAGGATGATTCAAATGTCAACACTATCTATCTCATATTTGAGTTTGTTCCAAACAAAAGTTTAAGAAGCTGTGTCTCTGGATCTTCTGGAGAAAAGCTTTCTTGGACACAAAGAATAGCAGCTGCAATTGGAGTGGTGAAAGGCATTCAGTTTTTGCACACAGGGATAGTGCCTGGACTATATTCAAATAATCTAAAGATAACAGATATTCTTTTGGATAACAATCATAATGTTAAAATAAGCAGTTATAATCTGCCACTCTATGCTGAAAACAAAAGAATGGTCAACAATGGAACTTCCCCTGGATTAAAAGGAAATCTCCAAGCAAGGATAAAGGATGCAGACAAGCATGATGTCTATGATATTGGGGTAATCTTGCTAGAAATCATTCTGGGACGACCAATAATGTTCCACAATGAAGTTGGTACACTAAAAGATCTTTTACAGGTAAGTATCAAGACTGATGATATAGCTAGAAGGAGTATTGTTGACCCAGTAATTCATAAGGAATGCTCAGATGAATCATTAATGACAATGATGGAGATATGTGTAAGGTGTCTCTCTAGTGAACCAACTAATAGGCCTTCTGTGGAAGATGTTCTTTGGAATTTGCAGTTTGCAGCACAAGTTCAGAATACATGGAAAAGAGACTCAAATGATAATAGAGACTCGCCTGCACCATCCTCCAGGGAGACATAA 2502 0.3969 MANPVSHSYLLLLILFLTIHLSEELQFSQYQTLLKVQQLLGYPSALGSYSSNTDNCNIEPTPSLTLVCYEDSLTQLHVVGNKGFTSLPQNFSSDTLFATLGSLSSLKVLSLVSLGLWGPLPESIAQLSSLEILNISSNYFNGAIPVQVSHLKNLQSVVLDDNNFNGEIPNWVGSLQGLAVLSLKNNWFSGNLPTSVKSLVTLRVLDLSNNQLSGELPNLHNLSNLQVLHLENNTFGPHFPSLPTKLVSLVLRNNSFKLSVPSNISSFYQLQKLDLSFNGFVGPFPPSLLSLPSLNYLDISSNKFTGLLFKNFSCNDDLHFVNLSSNLLKGELPTCLRPKTRVVLYTRNCLSNENQDQLPSTFCSNEALAVNVTPQQQKHKRTTGTTVLVSSMGGVVGVLIVGVVILVVSQVHKKHVVKTPSKSTLENVISQAQNEDEVKTPKRSIMEHIISRVPDKHAVKTLSRSIKEQVMSRVNNKRIVKTPTRSIIEHVSSVNTAKLLTDARYISQTMKMGASFPAYRTFPLDELKEATNNFDASCFISEGPHGQIYKGVLSDGMHIAIRGMKIRKKHSPQTYMHHVELISKLRHSHLVSALGHSFECNQDDSNVNTIYLIFEFVPNKSLRSCVSGSSGEKLSWTQRIAAAIGVVKGIQFLHTGIVPGLYSNNLKITDILLDNNHNVKISSYNLPLYAENKRMVNNGTSPGLKGNLQARIKDADKHDVYDIGVILLEIILGRPIMFHNEVGTLKDLLQVSIKTDDIARRSIVDPVIHKECSDESLMTMMEICVRCLSSEPTNRPSVEDVLWNLQFAAQVQNTWKRDSNDNRDSPAPSSRET. 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09671 833 SUPERFAMILY RNI-like 86 341 - -
Seca4g09671 833 PRINTS Leucine-rich repeat signature 202 215 - -
Seca4g09671 833 PRINTS Leucine-rich repeat signature 291 304 - -
Seca4g09671 833 Gene3D Transferase(Phosphotransferase) domain 1 617 828 - -
Seca4g09671 833 FunFam Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 244 368 - -
Seca4g09671 833 Pfam Leucine Rich repeats (2 copies) 201 233 IPR025875 -
Seca4g09671 833 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 617 821 - -
Seca4g09671 833 Gene3D Ribonuclease Inhibitor 242 371 IPR032675 -
Seca4g09671 833 SUPERFAMILY Protein kinase-like (PK-like) 513 807 IPR011009 -
Seca4g09671 833 Gene3D Ribonuclease Inhibitor 28 148 IPR032675 -
Seca4g09671 833 FunFam Leucine-rich repeat receptor protein kinase EMS1 144 242 - -
Seca4g09671 833 ProSiteProfiles Leucine-rich repeat profile. 201 223 IPR001611 GO:0005515
Seca4g09671 833 ProSiteProfiles Protein kinase domain profile. 534 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09671 833 Gene3D Phosphorylase Kinase; domain 1 494 616 - -
Seca4g09671 833 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 104 822 - -
Seca4g09671 833 Pfam Protein kinase domain 541 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09671 833 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 508 616 - -
Seca4g09671 833 Gene3D Ribonuclease Inhibitor 149 241 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09671 Seca-Chr4 227451200 227456284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09671 42 830 Miscellaneous Gene Families AT3G03770 42.750 8.70e-177 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Seca4g09671 Pkinase 1.7e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09671 - - lja:Lj0g3v0004239.1 1317.75