Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09663 ATGGAGTCTCTTTTGAAGGATTTCGAAGTAGAGTCAAAGAATCCATCTGAAGAGGCGCTGAGACGTTGGAGATCGAGCGCAGCAGCGTTTGTGAAGAATCGCCGGAGAAGGTTCCGCTATGCCGCGGATCTCGAAAAACGTGCCGAAGCGGAAGAAATCAAGGAAAAGATTCAGATTGCTCTATATGTTCAGAAAGCAGCTTTGCAATATATTGAATCTGAGTCTGGTAAACTTGAATATGAGAATCATGCCACATCTGATCTTCCAGCTGGTTTTGGCATTGATCCAGATTCGATTGCATCTCTTGTTCGGTTCTGTGATAACAACAGGTTGAAAGAAATTGATGGAGTTGAAGGGGTTGCGAGGAATCTCCATATCTCAGTGGTAGATGGTATTAGTGAAGACAGCATAAATACCCGGCAAAACTATTACGGGTTTAACCGCTATGCAGAAAAGCATTCTAAAACTTTTCTTATGTTTATGTGGGAATCACTGCAGGACTCAACACTCATTATTCTCATGGTTTCTTCCATAGTTTTAATAGGTGTAAGAGTTGCCACCGAAGGGTGGCTGGTGAGTTTGTATGATGAGGTGGGAATTATACTTGGTGTATTCTTGGTAATCATCTTTACCACTGTCAATGACTACCAGCAATCATTGAAGTTCAGGGAATGGGACAAAGAGAACAAAAACATTTTTGTTGAGGTCACCAGAGATGGGAAAAGACAGAAGATATCAATTTATGACCTGGTGGTAGGAGACATTGTTCATTTGTCAATTGGGGGTCAAATTCCTGCTGACGGTATTTACATATCGGGATACAATTTACAGATCGATGAATCAAGTTTAACAGGTCAGATTGAAACAGTTCATGTAAATGAAGAAAAGCCTTTTCTCCTTGCAGGAACCAAAGTGCAAGGTGGGTCAGGGAAGATGATAGTGACAACTGTTGGCATGAGGACTGAATGGGGAAAGTTAGTGGAAGTTCTGAATGAGGGAGGAGTGGAGGAAACCCCGTTGCAGGTGAAATTGAATGGGGTTGCCACAATCGTTGGTAAGGTTGGCTTGAGTTTTGCTCTGCTGACATTCGTGGTGTTGATGATAAGGTTTCTGGTGGAAAAAGCACTTAATGGTGAGTTTACTAATTGGTCATCAAAAGATGTGATCAAGCTGTTGAACTACTTTACTTTAGTTGTGACCATGATAGTCATTGCTGTTCCTGAAGGCTTACCATTGGCTGTGACACTCAACCTTGCTTTTGCAACAAAAAATTTAATGAGTGATAAGGTACTAGTGAGGCATCTTTCTGTATGTGAGGCAATGGGTTCAGCCAGTTATATTTGCTTAGATAAGACAGGGACGTTGACCACTAACCACATGGTGGTTGATAAAATATGGATATCTGGAGAAGTTGTGAAGATGAAAGGTAAGAAGAGTGGAGACAAACTGAAAACAAAGATATCTGAAGGAGCTCTAAACATACTTCTGCAGGCTATATTTCAAAATAATGCTTCTGAAATGGTTCAGGATAAACATGGAAAGATCACAATACTGGGAACACCAACAGATTCAGCATTATTGAAACTTGGCTTGCTTTTGGAGGGTGATTTTGATGTCCAATGCAGATTGTATGAGAAACTAAAGGTTGAGCCTTTTAATCCTGTCCAGAAGAAGATGACTGTCCTTGTTAGCCTTCCTGATGGAGGAGTAAGAGCTTTCTGCAAGGGTGCTTCAGAAATAATATTAAAAATGTGTGACAAAATCATTGATTGCAATGGAATACCTGTTGATTTCTGTGAAGACTATGCAAACAATGTCTCTGATGTTATAAATGCTTTTGGCTCTAAGACTTTGAGAACTCTTTGTTTGGCTGTCAAAGATATAAATGTAACCCCTGGTGAAGCTGACATCCCTGATAATGGCTATACACTGATAGCAGTTGTAGGAATCAGAGATCCTGTGCGCCCTGGGGTCAAAGATGTTGTTCAAAATTGTTTAGCAGCTGGGGTGACCGTTGCTATGATCACTGGTGATGATATAAATATAGCTAGGGCTATTGCTACAGAATGTGGTATACTAAAAAATGGTGGTGTAGCAATAGAAGGACCAGAATTTCGTAATTTGTCTACAAGGCAAATGAAGGTTATGGTACCAAGAATTCAGGTAATGGCACGGGTCCTACCACTTGACAAACACTCCTTTGTAGCTAATCTAAAGAATATGTTTGGTGAGGTTGTAGCTGTTACTGGTGATGGAACCAGTGATGCTCCTGCACTGCATGAGGCAGACATCGGAGTTGCCATGGGATTAACAGGAACCGAGGTTTTCTTTTGTCTTTAA 2340 0.409 MESLLKDFEVESKNPSEEALRRWRSSAAAFVKNRRRRFRYAADLEKRAEAEEIKEKIQIALYVQKAALQYIESESGKLEYENHATSDLPAGFGIDPDSIASLVRFCDNNRLKEIDGVEGVARNLHISVVDGISEDSINTRQNYYGFNRYAEKHSKTFLMFMWESLQDSTLIILMVSSIVLIGVRVATEGWLVSLYDEVGIILGVFLVIIFTTVNDYQQSLKFREWDKENKNIFVEVTRDGKRQKISIYDLVVGDIVHLSIGGQIPADGIYISGYNLQIDESSLTGQIETVHVNEEKPFLLAGTKVQGGSGKMIVTTVGMRTEWGKLVEVLNEGGVEETPLQVKLNGVATIVGKVGLSFALLTFVVLMIRFLVEKALNGEFTNWSSKDVIKLLNYFTLVVTMIVIAVPEGLPLAVTLNLAFATKNLMSDKVLVRHLSVCEAMGSASYICLDKTGTLTTNHMVVDKIWISGEVVKMKGKKSGDKLKTKISEGALNILLQAIFQNNASEMVQDKHGKITILGTPTDSALLKLGLLLEGDFDVQCRLYEKLKVEPFNPVQKKMTVLVSLPDGGVRAFCKGASEIILKMCDKIIDCNGIPVDFCEDYANNVSDVINAFGSKTLRTLCLAVKDINVTPGEADIPDNGYTLIAVVGIRDPVRPGVKDVVQNCLAAGVTVAMITGDDINIARAIATECGILKNGGVAIEGPEFRNLSTRQMKVMVPRIQVMARVLPLDKHSFVANLKNMFGEVVAVTGDGTSDAPALHEADIGVAMGLTGTEVFFCL. 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09663 779 SFLD p-type atpase 430 775 IPR044492 -
Seca4g09663 779 SUPERFAMILY Calcium ATPase, transduction domain A 232 328 IPR008250 -
Seca4g09663 779 FunFam Calcium-transporting ATPase 210 331 - -
Seca4g09663 779 NCBIfam calcium-translocating P-type ATPase, PMCA-type 111 775 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Seca4g09663 779 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Seca4g09663 779 NCBIfam HAD-IC family P-type ATPase 384 470 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g09663 779 PANTHER CATION TRANSPORTING ATPASE 79 775 - -
Seca4g09663 779 Pfam E1-E2 ATPase 234 426 - -
Seca4g09663 779 Pfam Cation transport ATPase (P-type) 503 588 - -
Seca4g09663 779 SUPERFAMILY HAD-like 436 775 IPR036412 -
Seca4g09663 779 PRINTS Sodium/potassium-transporting ATPase signature 572 590 - -
Seca4g09663 779 PRINTS Sodium/potassium-transporting ATPase signature 441 462 - -
Seca4g09663 779 FunFam Calcium-transporting ATPase 458 653 - -
Seca4g09663 779 Gene3D - 15 72 - -
Seca4g09663 779 Gene3D - 163 444 - -
Seca4g09663 779 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 454 658 IPR023299 GO:0000166
Seca4g09663 779 ProSitePatterns E1-E2 ATPases phosphorylation site. 450 456 IPR018303 -
Seca4g09663 779 Gene3D - 458 653 IPR023299 GO:0000166
Seca4g09663 779 Pfam Cation transporter/ATPase, N-terminus 116 179 IPR004014 -
Seca4g09663 779 Gene3D - 445 775 IPR023214 -
Seca4g09663 779 FunFam Calcium-transporting ATPase 15 72 - -
Seca4g09663 779 PRINTS P-type cation-transporting ATPase superfamily signature 448 462 - -
Seca4g09663 779 PRINTS P-type cation-transporting ATPase superfamily signature 646 657 - -
Seca4g09663 779 PRINTS P-type cation-transporting ATPase superfamily signature 279 293 - -
Seca4g09663 779 PRINTS P-type cation-transporting ATPase superfamily signature 668 678 - -
Seca4g09663 779 PRINTS P-type cation-transporting ATPase superfamily signature 749 768 - -
Seca4g09663 779 SFLD Haloacid Dehalogenase 430 775 - -
Seca4g09663 779 Gene3D - 131 331 - -
Seca4g09663 779 SUPERFAMILY Calcium ATPase, transmembrane domain M 116 442 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09663 Seca-Chr4 227338461 227343812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09663 53 775 Primary Pumps ATPases AT3G57330 60.221 0.0 891
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09663 K01537 - gmx:100783489 998.808