Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09662 ATGCTAGTGCCTGTGAGTTTGTGCAAAACTGCTGCTAGGAAAGTTGTTGAAGAGCTTGCATCTCTACTCAATCAGAAGTATAACTCATACTCATCCTTCGAGGATGACTTTAACAAGCTTAAAAGCGACTTAAAAGCTATTTCAGCAGTTCTTCTTGATGCAGAAAAAAAGCAGGAGAAGAGCCACTTGATTCAGGATTGGTTGAGGAATCTCCAACATGCTTTGCACGATGCAGAAGACTTGTTGGATGATATAAATGCAGAAGCTTTGCGGCAGAATGTGGAGGCTGAATGGCGCATGGTGACTTGGGTAAGAAACTTGTACTTCCTTTCTGGAATGGATTATAGAGTTAAGAAAATTCAAGGGAGAATAGATGACATAGCAAAACAGAGAAGGAGTCTTTGCTTGCAGGAGCTGAATCATGATGTGATTGTTCCCCAGAGGGAGCACAAACCCTCATATCTGCGCTTCACAGAGGTTGTTGGAAGAGAAGAAGACAAGAAAGAGGTCATAGAACGGTTATTTAGTGGTAGTAACAATGGTGATAGTGTTTTGGTTGTTCCTATAGTGGGAATTGGGGGGTTGGGAAAGACTGCACTTATCCATTTGGTTTTTGATGATGAAAGGGTCAAGAGGGGTTTTGATTTGAGGATTTGGGTAGATGTGTCTGATGATCTGAATCCAGAGAAGATAAGGCAGAAGAAAATTATCAGAGCTGTAGATGGTTCAGATAAGAGTGTCCGTGGCATAGATTTCTTGTCATGCCTGCAAGATAAAGTGAGAGAGAAGAGATTTTTACTTGTTCTAGATGATGTTTGGAATTGCAATAGGGTAGAATGGCTTGATTTGAAGAATTTGTTAGGAAATGGTGCAAGAGGAAGCAGGATTCTAGTGACAACACGGTACAAAATTACTGCATCCATCATTGGTGAGAATAATCTGTATCAGTTAGGTGCTTTGGCTCATGGTCACTGCATATCACTGTTTGAGAAATGGGCATTTGGAGAGGGAGAAAGTGCTCAGCATCCAAATCTTGTGAAAATTGGTCAAGAGATAGTGATCAAATGTGGTGGAGTGCCTTTAGCAATACGCACTGTGGGAGGCTTGTTGTCTGGAAGCAAAGAGGAATCCTATTGGCTGTATGTGAAAAATGATGATACTTGGGGTGTGAGCCATATGCCTGAAAGGGAAGATGGTATCTTGTCAGTGCTCAAGTTAAGCTATGATCAATTGCCATCCCATTTAAAAGAATGCTTTGCATATTGCTCCTTACTTCCCAAAGGCCAAGAATTTGATAAGCAAGATTTGATCCACCTATGGATGGCTCAAGGTTTCATTCATTCCTCTGGCCAAGATCAGGAATTAGAAGATGTTGGAAGCTGGTATGTCAATGAATTTGTGTCCAGATCTATCTTTGATGTTGTACGTGAGAATCGTAAAACTGAAATTGTGAAGTGCAAGATGCATGATCTATTGCATGATCTTGCTAAATCAGTTGCAGGAAGCTTGATGGTTAACTCTGATACTACAAATATGTCTGACAGCACCAGGCATGTGGCATTTTGGGATCAGGACCTTACAGAAGATCCAAGTTCATTTCTCAAGTTACCAAAGTTGAGATTGAGAACAATTCTTTGGCATACCAAATGGGGAATCTCCATAAGGTCAGGATCCCATTTGAATGTCCTTCTCTCTGGTTCAACTTACTTGCGTGTGTTGAATTTGAGCAACTCAGGCCTAAAACAACTACCAAACAGCATTGGTAACATGAAACATCTGAGGTATCTAAATCTAAATGGTAACATTGACCTTCAGTCCCTTCCTGATTCCATTTGTGGGCTGCATTTTCTACAGACTATGAAGTTATCAGGCTGCAGAAGAATTAGTACCTTCCCCAAAAATTTCAGCCACTTAGTCTCACTCAGATATTTGGTAATAACCTCTCCATATGTTTGGGAGAAACAACTTGGGACTTTGACATCCCTCCGGTGTTTAACAATTGAACATTGTAGAAATCTTGTGTCTTTGACTGAAGTGACACAGCACCTCACTGCCCTTCGATCACTACATATCCACAACTGTAACAAGTTAACTTCGTTGCCAAGTAGCTTGAAAAACTGTACTGCCCTTGAGAATTTGGAAGTTGTCAACTGCCCCAAGATGGAATCATTGGAGGTGTGCATGCAAGATCTTCATAGATTTCGTTCTTTAACCATCAAAGGTCTACACAAATTGACAACTCTACCAGCCAAGCTTGAATGCTATGCCAGCAGTCTTCAGTATCTGTTCATAATAGATTGCATTAGTCTTATGAAACTACCCGAATGCCTGGGGAATCTCTCATCACTGATGCGTATCTACATTAGTTATTGCCCCAACCTGCTAAATCTGCCATATGGGTTCTGTCACCTTACTGCTTTACAAGTTTTGCAAATTGATGGATGTCCCCTTTTAAGCACAAGATGCCGAAGGAATGTTGGTGAGGATTGGCAACAGATAGCTCATGTACGAGAGATCTATGTTGACAATGTCAAAATCTAG 2541 0.4097 MLVPVSLCKTAARKVVEELASLLNQKYNSYSSFEDDFNKLKSDLKAISAVLLDAEKKQEKSHLIQDWLRNLQHALHDAEDLLDDINAEALRQNVEAEWRMVTWVRNLYFLSGMDYRVKKIQGRIDDIAKQRRSLCLQELNHDVIVPQREHKPSYLRFTEVVGREEDKKEVIERLFSGSNNGDSVLVVPIVGIGGLGKTALIHLVFDDERVKRGFDLRIWVDVSDDLNPEKIRQKKIIRAVDGSDKSVRGIDFLSCLQDKVREKRFLLVLDDVWNCNRVEWLDLKNLLGNGARGSRILVTTRYKITASIIGENNLYQLGALAHGHCISLFEKWAFGEGESAQHPNLVKIGQEIVIKCGGVPLAIRTVGGLLSGSKEESYWLYVKNDDTWGVSHMPEREDGILSVLKLSYDQLPSHLKECFAYCSLLPKGQEFDKQDLIHLWMAQGFIHSSGQDQELEDVGSWYVNEFVSRSIFDVVRENRKTEIVKCKMHDLLHDLAKSVAGSLMVNSDTTNMSDSTRHVAFWDQDLTEDPSSFLKLPKLRLRTILWHTKWGISIRSGSHLNVLLSGSTYLRVLNLSNSGLKQLPNSIGNMKHLRYLNLNGNIDLQSLPDSICGLHFLQTMKLSGCRRISTFPKNFSHLVSLRYLVITSPYVWEKQLGTLTSLRCLTIEHCRNLVSLTEVTQHLTALRSLHIHNCNKLTSLPSSLKNCTALENLEVVNCPKMESLEVCMQDLHRFRSLTIKGLHKLTTLPAKLECYASSLQYLFIIDCISLMKLPECLGNLSSLMRIYISYCPNLLNLPYGFCHLTALQVLQIDGCPLLSTRCRRNVGEDWQQIAHVREIYVDNVKI. 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09662 846 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 422 IPR027417 -
Seca4g09662 846 Pfam Leucine rich repeat 569 626 IPR001611 GO:0005515
Seca4g09662 846 Coils Coil 68 88 - -
Seca4g09662 846 Gene3D - 408 499 IPR036388 -
Seca4g09662 846 Gene3D - 147 313 IPR027417 -
Seca4g09662 846 PANTHER DISEASE RESISTANCE PROTEIN RP 40 815 IPR044974 GO:0006952
Seca4g09662 846 Pfam Rx N-terminal domain 13 94 IPR041118 -
Seca4g09662 846 Pfam NB-ARC domain 163 409 IPR002182 GO:0043531
Seca4g09662 846 Gene3D - 319 407 IPR042197 -
Seca4g09662 846 FunFam Probable disease resistance protein At1g63360 408 498 - -
Seca4g09662 846 Gene3D - 11 126 - -
Seca4g09662 846 SUPERFAMILY L domain-like 487 820 - -
Seca4g09662 846 Gene3D Ribonuclease Inhibitor 502 846 IPR032675 -
Seca4g09662 846 PRINTS Disease resistance protein signature 259 273 - -
Seca4g09662 846 PRINTS Disease resistance protein signature 356 370 - -
Seca4g09662 846 PRINTS Disease resistance protein signature 186 201 - -
Seca4g09662 846 PRINTS Disease resistance protein signature 657 673 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09662 Seca-Chr4 227286373 227288913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09662 187 755 WRKY Transcription Factor Family AT5G45050 23.353 1.34e-15 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09662 - - lang:109363325 1124.77