Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09624 ATGGCTTTTGCTTCTTCTGTTGTGTCTTTGAAAAAATATGATGTTTTTCTTAGCTTTCGGGGTGAGGATACTCGCAGTAACTTCACAAGTCATTTGCATGATGCTTTGAGCCGAAAGAAAGTTGAGACATTTATAGATTATGAGCTTGAAAAAGGAGATGAGATCTCACCAGCACTCATCAAAGCCATTGAGGAGTCACATGCATCTATACTCATCATCTCAGAAAACTATGCTTCCTCAAAATGGTATCCATCACATGTGAGGAAGCAGACAGGGAGCTATGAGAAAGCCTTTGCAAAACATGAGGGAGATTTGAAGCTCAACCAGGACAAGGTTCAGAAATGGAAAGCTGCTCTAACTGAAGCAACCAATTTAACTGGCTGGGACTCTAGAACTTACAGGAATGAATCTGAATTCATTCAGGACATTGTCAAAGATGTTGTGCAAAAAGTGAAGTCAAGGTACCCAAATCAATCGAAGGGACTGGTTGGAATTGAGAAGAATTATGTACCAATTGAACGATTACTGGAAATAGGTACAAGTGATGTTAGAATGATTGGAATATGGGGCATGGGTGGCATAGGGAAAACCGCCCTTGCTACTGCCTTATATGCCAATCTGTCTTCTCAATTTGAAGTTCATTACTTCCTTGAAAATGTAAGGGAACGATCAGACAAGAATGGACTGAATGCTTTACGTTATGAACTTCTTTCTGAGTTGTTAGAGGAAGAATGTCTTAGTCTTCATACACTCAAAGTAGAAACCCCTTACCTCATGAGTAGGCTTGGACGTAAACAAGTTTTCATCATGTTGGATGATGTGGCTACCTCAGAGCAATTAGAAGCTCTAATAGATAAGGATTGCTTGGGACCAGGAAGTAGAGTCATTGTTACAACTAGAGACAAGCGCATAATTAGTCAAGTTGATGAAATATATGAGGTCGATAGTTTGAACTTTGATGACTCACTTCACCTTTTTTGTTTGCATGCCTTTGGCTTTAGACAGAAGCATTCTGAAATTGGATTTGAAGGTCTATCAGAAAGTGCTGTAAAATATTGCAACGGTGTTCCTTTGGCTTTAAAAGTTTTAGGTGCACATCTTCATTTAAGAAGCAAAGCAGTATGGGAAGATGAATTGAGAAAGCTCCAAAAGTTTTCCAATGTGAAAATTCATAAGGTGTTGAAATTAAGTTATGATGACTTAGATTCTACTCATAAGGACATATTTCTAGACATTGCGTGCTTCTTCAAAGGATGGTCTATAGAACGTGTAACACGTCTATTGGAAGCTTGTGATTTCTTTGCAGCAAGTGGGATAGAAACCCTTATAGACAAAGCTCTCATAACCATTTCATATGACCAGAAAATAGAAATGCATGACTTAATACAAGAAATGGGTCGGGAGATTGTTAACCAAGAATGTATCAAAAACCCTGGGGAACGAAGTCGGTTATGGAAAAGTGAAGAAGTGTTTGATGTATTAAAAAATAACAGGAAGATTCTGCATTTGAGCTCTGATTCCTTTAAAAGGATGACAAACTTAAGATATCTCATAATCTATTGTTGGAAGAACCATGAACCTAAGACTAAGGTTTACCTTCCTAACAATTTGGAATTTTTGTCTGATAAATTGAGGTGCCTTCGATGGGATGGATTTTGTCTTGAGTCTTTACCATCTACCTTTTCTGCTGAAATGCTTGTAGAGTTTTCCATGCGTCACAGCAAGCTTAAAAAGCTTTGGGATGGAGTTCAGAATCTTGTAAATTTGAAGAAAATTCATCTTTACTGGTCTGGACACCTGGTTGAGGTCCCAGACTTATCAAGGGCCACAAATCTTGAAATAGTGAATCTTTATCATTGTTCAGGCTTGCGTAAGCTCCATCCATCCATTTTATCTCTCCCCAAGCTTACACATCTAGATTTAACGAACAAGTTATCCAGTCATCCAAGATTGTGGTCTCTCACATTTCTGATCCTTTCTGGGTGCACAAAAATCAGTGCATTGGATCTGCAGTTCATCTTTGATGTCATGCAACATTTAACCCTACTAGATTTGTCAAACTGCTCCAACATAACAGCACTCCCTGACAACACCAAAAACCTTTCAATGTTGAGAATACTTAGCTTAAATGATTGCAGGAATCTTGTGTCTCTACCAGCGCTTCCATCATCCCTGGAAACGTTGTATGCCTTAAATTGCACTTCTCTAGAGGGATACTTCACTCATAGGCTAGTGAATGAGCACATGTTTCAAAACTTCCCTCGTAAATTTCCTGGAGCTTTATTCCCTGGAGCCCAAGTTCCGGATGGGTTTAGCTTCCGTACAACAGAGGCTTCAATAACAATTTCTCATGATCCAAAACTTCATTTGCGGGGTTTCATTTTTTGCGTCATTCTTTCTGATGGAATCTTATATGATGAATTCTATAAGATCATTGTTAATATTATCTCTGAAAACGGCCAAGTGGTTGGGCACAGCAGTCCGTATTATTTTATAAATAAAAGTTTGATTTCAGATCATGTGATGTGTCAGTATATTCACATCAGCAGTTTTTCGGAACTAGAAAGAAGTGCATTTGATCAGTGCAAATTATCATTTGAATTCAAGTTACAACTGTTTTTTGTTGGACAGTCAACGGTGGGGATAAAGGGGTGTGGGGTCTTCCCAGTAAAGGAAGAGGAAAAGGACTTGAATGAAAAATGA 2703 0.3848 MAFASSVVSLKKYDVFLSFRGEDTRSNFTSHLHDALSRKKVETFIDYELEKGDEISPALIKAIEESHASILIISENYASSKWYPSHVRKQTGSYEKAFAKHEGDLKLNQDKVQKWKAALTEATNLTGWDSRTYRNESEFIQDIVKDVVQKVKSRYPNQSKGLVGIEKNYVPIERLLEIGTSDVRMIGIWGMGGIGKTALATALYANLSSQFEVHYFLENVRERSDKNGLNALRYELLSELLEEECLSLHTLKVETPYLMSRLGRKQVFIMLDDVATSEQLEALIDKDCLGPGSRVIVTTRDKRIISQVDEIYEVDSLNFDDSLHLFCLHAFGFRQKHSEIGFEGLSESAVKYCNGVPLALKVLGAHLHLRSKAVWEDELRKLQKFSNVKIHKVLKLSYDDLDSTHKDIFLDIACFFKGWSIERVTRLLEACDFFAASGIETLIDKALITISYDQKIEMHDLIQEMGREIVNQECIKNPGERSRLWKSEEVFDVLKNNRKILHLSSDSFKRMTNLRYLIIYCWKNHEPKTKVYLPNNLEFLSDKLRCLRWDGFCLESLPSTFSAEMLVEFSMRHSKLKKLWDGVQNLVNLKKIHLYWSGHLVEVPDLSRATNLEIVNLYHCSGLRKLHPSILSLPKLTHLDLTNKLSSHPRLWSLTFLILSGCTKISALDLQFIFDVMQHLTLLDLSNCSNITALPDNTKNLSMLRILSLNDCRNLVSLPALPSSLETLYALNCTSLEGYFTHRLVNEHMFQNFPRKFPGALFPGAQVPDGFSFRTTEASITISHDPKLHLRGFIFCVILSDGILYDEFYKIIVNIISENGQVVGHSSPYYFINKSLISDHVMCQYIHISSFSELERSAFDQCKLSFEFKLQLFFVGQSTVGIKGCGVFPVKEEEKDLNEK. 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09624 900 PRINTS Disease resistance protein signature 353 367 - -
Seca4g09624 900 PRINTS Disease resistance protein signature 185 200 - -
Seca4g09624 900 PRINTS Disease resistance protein signature 699 715 - -
Seca4g09624 900 PRINTS Disease resistance protein signature 261 275 - -
Seca4g09624 900 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 128 IPR035897 -
Seca4g09624 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 412 IPR027417 -
Seca4g09624 900 Gene3D Ribonuclease Inhibitor 435 755 IPR032675 -
Seca4g09624 900 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 732 IPR044974 GO:0006952
Seca4g09624 900 Gene3D - 150 315 IPR027417 -
Seca4g09624 900 SUPERFAMILY "Winged helix" DNA-binding domain 389 495 IPR036390 -
Seca4g09624 900 Pfam TIR domain 12 82 IPR000157 GO:0007165
Seca4g09624 900 Pfam TIR domain 84 163 IPR000157 GO:0007165
Seca4g09624 900 Gene3D - 316 402 IPR042197 -
Seca4g09624 900 SUPERFAMILY L domain-like 498 742 - -
Seca4g09624 900 ProSiteProfiles TIR domain profile. 11 151 IPR000157 GO:0007165
Seca4g09624 900 Pfam Leucine Rich Repeat 566 584 IPR011713 -
Seca4g09624 900 Gene3D - 9 82 IPR035897 -
Seca4g09624 900 Pfam NB-ARC domain 172 402 IPR002182 GO:0043531
Seca4g09624 900 Gene3D - 83 149 IPR035897 -
Seca4g09624 900 SMART till_3 12 125 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09624 Seca-Chr4 226725424 226729133 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09624 9 739 WRKY Transcription Factor Family AT4G12020 33.079 1.58e-95 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09624 - - cam:101499873 808.52