Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09623 ATGATCAATTTTCCTGCTTCTTCTTCTTCCTCTACGTCTACCAAAAAACATGATGTTTTTGTTAGTTTTCGAGGGGAAGATACTCGCCGTAACTTCACAAGCCATCTTTACAATGCTTTGGCCCAAAAGAAAATTGAAACGTATATAGACTACCGGCTTGAAAAGGGAGATGAGATCTCGCCTGCACTGATGAAAGCAATTGAAGAGTCACATGTATCTGTTGTCATCTTTTCAGAAGACTATGCTTCCTCAAAGTGGTGCTTGATTGAAATCAGTAAGATTTTAGAATGCAAAAAGGATCATGGACAAATTGTTATTCCTGTCTTCTATGAAATAGATCCATCACATGTAAGGAAGCAGATAGGGACCTACCACCAAGCATTTCAAAAACATGAGCGAGATCTGAAGATCAACAATCACACACTGCAAAAATGGAGAGATGCTCTCACAGAAGCGTCCAATTTGTCTGGGTGGGACTCTCGAACTTACAGGACTGAATCTGAATTCATTAAGGACATTGTTAAAGACATTTTACAAAAATTGAATCTCATATATCCAATTGAATTGAAGGGAGTGGTTGGGATCGAGGAAAATTATGTAGGGGTTGAATCATTATTGGAAATTGGCTCAAGAGAAGTTCGAATCATTGGAATATGGGGTATGGGTGGTATAGGAAAAACCACCTTGGCAATTGCTTTACATGCCAAACTGTCTCCTCAGTTTGAAGGTTATTGTTTTCTAGCAAATGTAAGGGAACAATCAGAAAAGTATGGTCTAGACGTCTTACGTAACAAACTCTTTTCTGAGCTATTAGAGGAAGAAAATCTTCATGTTGATGTTCCCAAAGTTGAATTTTGTTTTGTGACGAGTAGGCTTAGACGTAAAAAGGTTTTTATTGTTTTGGATGATGTGGCTACATCAGAACAGTTAGAAGATCTAATCAGTAATATTCATGATTGTTTGGGAGCAGGAAGTAGAGTGATTGTAACAACTAGAGATAAGCATATATTTAGCCATGTTAATGGAATATATGAGGTCAAGGAATTGAATGACCATGACTCTCTTGAGCTTTTTTGTTTGAATGCTTTCAAAGAAAAGCATCCTAAAAATGGATATGAAGAGCTATCAGAAAGTGTAATAGCTTATTGCAAAGGAAATCCGTTGGCTTTAAAAGTTTTGGGTGCACGTCTTCGTTCAAGAAGTAAAGAAGCATGGAAAAGTCATCTGAGAAAGCTCCAAAAGATTCCAGATGTGAAGATTCATAATGTGTTAAAATTGAGTTTTGATGACCTGGATCGTACCCAACAGGACATATTTCTAGACATTGCATGCTTCCTCAAAGGAGAATCTAGAGATCATGTGATAAGTCTACTAGAAGCTTGTGATTTCTTTCCAGAAATTGGGATAGAAGTACTTTTAGATAAAGCTCTTATAACTATTTCAAATAACGATAAAATAGAAATGCATGACATGATACAAGAAATGGGTTGGAAAATTGTTCATGAAGAATCTATCAGAGAGCCTGGAAGACGGAGTCGATTGTGGGATCCTGACGAAGTGTGTGATGTATTGACATATAATAAGGGAACTGAAGCTATAGAAGGGTTAATTCTAGACGTGTCTAAAATTGAGGATCTGCATTTGAGGTATAATTCCTTTGCCAAAATGACTAAGATGAGATTTCTTAAATTCTATGCTGGGAAGTGGAGTACTGACAGATGCCATATATACCTTCCCAACGGTCTTCAATCATTGTCTGACAATTTAAGGTACCTTCAATGGCATGGATATTGTTTAGTGTCTTTGCCATCAACCTTTAGTGCTAAATGGCTTGTTGAGCTTTCCATGCCCTACAGCAACCTTGAAAAGCTTTGGGACGGTGTTCAGGATCTTGTGCATTTAAAGGAAGTTGACCTTAGGTTCTCCAAAAACCTGGTTGCAGTCCCGGACTTATCAATGGCCACAAATCTTGAAGGATTATCTCTTCTTCATTGTAAAAGTTTGCGTCAAGTTCATCCATCCATTTTGTCTCTCCATAAGCTCAAATATTTGGATTTAGAAGGTTGCACAGAGATTGAAAGCCTTCAAACTGACATTGATTTAGAATCTCTCTGTGACCTCCGTCTCAGCCACTGCTCAAACCTGAAGGAATTTTCAGTCTCCTCAAAGAACCTGGTGAGATTGTGGCTAGGTGGTACAGCTATCCAAGAATTTCCTTCATCAATTTGGCGCTGTAAGAGACTTCAACTTATTAATCTAGAAGGTTGCGTCAATCTTGACAGTTTTGGGAATCAGTTATCTCGTGATATAGGAATGGGATCTCTTGGCGTCCTGGTCCTTTCTGGGTGCAAACAACTGAACGCATCAAATTTATGTTGTATTCTTGATAGGCTGCTGTTTTTAAAGTGGCTAAGTATGGAAGATTGTTGCAACTTACAAGCACTCCCTGATAGCATTGGCTTCTTAAAATCATTAGAGAGCTTAAAACTAAGTGGAAGCAATGTTGAGAGCTTGTCTGCAAATGTCAAAAACCTTTTGAAGTTGAGAGAGCTTTGGTTAGACAATTGCAAGAAACTTGTGCAGCTGCCAGAGCTTCCACCTTCCCTACAAATATTAAGTGCCGTTAACTGCACATCTTTGGAGACAGACTTCACTCAACAGCTAGTGCTAGAACGTCCTAGATTTGTTTTCCTCCCTGGAGCCCAAATTTCGGGTAAGTTTAGCTTTTTTGCTGAAGGGACTTCAATAACTATATCTCATCTTCCACAATCTGGCTTACACGGTTATATCCTTTGCCTCATTCTTTCTCAATCACCGCCAAATTGTAAATATGCATATGTTAAATGTGTTGTCGACAAAGCTTCTGAAAGAACCGGTAGCAAATATACCTTTCCGATTAATCAGAGTTTGATTTCTGATCACGTGTTTCTTCCGTATATTGACATCAATAAAGGTGAGGATAATCCCTTTTATAGGGAAATGCAAAAAAGTGGAGTGTATGATATTGATTCTTGCAACATATCATTTAAATTCAATCTTGATGGAGACAATGGAGAATGGTTAACAAATAGGATAAAGGGGTGTGGGGTCTACCCAGGATCGGTGTTGGAGTTAGGTGGTGGTTCAAAAGATATCGTTGAGTTACAACCCAGAGCAATTGGATTTGAAGTCAAAGGATCTAAATCTAACCATGACAATGATGATAACCAGACTAAGAAATTACAGCAAGTTAACCAAAACAATATTACAACAGGTATTCAGCATCAAAAAGAGGACTTCAAAGGAAAATCACCATATCACCACTTCACAGGTATGAAACATTGA 3324 0.3812 MINFPASSSSSTSTKKHDVFVSFRGEDTRRNFTSHLYNALAQKKIETYIDYRLEKGDEISPALMKAIEESHVSVVIFSEDYASSKWCLIEISKILECKKDHGQIVIPVFYEIDPSHVRKQIGTYHQAFQKHERDLKINNHTLQKWRDALTEASNLSGWDSRTYRTESEFIKDIVKDILQKLNLIYPIELKGVVGIEENYVGVESLLEIGSREVRIIGIWGMGGIGKTTLAIALHAKLSPQFEGYCFLANVREQSEKYGLDVLRNKLFSELLEEENLHVDVPKVEFCFVTSRLRRKKVFIVLDDVATSEQLEDLISNIHDCLGAGSRVIVTTRDKHIFSHVNGIYEVKELNDHDSLELFCLNAFKEKHPKNGYEELSESVIAYCKGNPLALKVLGARLRSRSKEAWKSHLRKLQKIPDVKIHNVLKLSFDDLDRTQQDIFLDIACFLKGESRDHVISLLEACDFFPEIGIEVLLDKALITISNNDKIEMHDMIQEMGWKIVHEESIREPGRRSRLWDPDEVCDVLTYNKGTEAIEGLILDVSKIEDLHLRYNSFAKMTKMRFLKFYAGKWSTDRCHIYLPNGLQSLSDNLRYLQWHGYCLVSLPSTFSAKWLVELSMPYSNLEKLWDGVQDLVHLKEVDLRFSKNLVAVPDLSMATNLEGLSLLHCKSLRQVHPSILSLHKLKYLDLEGCTEIESLQTDIDLESLCDLRLSHCSNLKEFSVSSKNLVRLWLGGTAIQEFPSSIWRCKRLQLINLEGCVNLDSFGNQLSRDIGMGSLGVLVLSGCKQLNASNLCCILDRLLFLKWLSMEDCCNLQALPDSIGFLKSLESLKLSGSNVESLSANVKNLLKLRELWLDNCKKLVQLPELPPSLQILSAVNCTSLETDFTQQLVLERPRFVFLPGAQISGKFSFFAEGTSITISHLPQSGLHGYILCLILSQSPPNCKYAYVKCVVDKASERTGSKYTFPINQSLISDHVFLPYIDINKGEDNPFYREMQKSGVYDIDSCNISFKFNLDGDNGEWLTNRIKGCGVYPGSVLELGGGSKDIVELQPRAIGFEVKGSKSNHDNDDNQTKKLQQVNQNNITTGIQHQKEDFKGKSPYHHFTGMKH. 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09623 1107 PRINTS Disease resistance protein signature 383 397 - -
Seca4g09623 1107 PRINTS Disease resistance protein signature 676 692 - -
Seca4g09623 1107 PRINTS Disease resistance protein signature 215 230 - -
Seca4g09623 1107 PRINTS Disease resistance protein signature 291 305 - -
Seca4g09623 1107 Gene3D - 181 346 IPR027417 -
Seca4g09623 1107 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 442 IPR027417 -
Seca4g09623 1107 Pfam Leucine Rich Repeat 611 629 IPR011713 -
Seca4g09623 1107 Gene3D Ribonuclease Inhibitor 724 890 IPR032675 -
Seca4g09623 1107 Gene3D Ribonuclease Inhibitor 519 723 IPR032675 -
Seca4g09623 1107 ProSiteProfiles TIR domain profile. 15 181 IPR000157 GO:0007165
Seca4g09623 1107 FunFam Disease resistance protein RPS4 530 723 - -
Seca4g09623 1107 Gene3D - 348 432 IPR042197 -
Seca4g09623 1107 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 765 IPR044974 GO:0006952
Seca4g09623 1107 Gene3D - 13 180 IPR035897 -
Seca4g09623 1107 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 183 - -
Seca4g09623 1107 Pfam TIR domain 16 187 IPR000157 GO:0007165
Seca4g09623 1107 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 158 IPR035897 -
Seca4g09623 1107 SMART till_3 16 155 IPR000157 GO:0007165
Seca4g09623 1107 FunFam Disease resistance protein (TIR-NBS-LRR class) 350 432 - -
Seca4g09623 1107 SUPERFAMILY L domain-like 488 883 - -
Seca4g09623 1107 Pfam NB-ARC domain 203 416 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09623 Seca-Chr4 226713560 226717969 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09623 12 858 WRKY Transcription Factor Family AT4G12020 32.251 6.23e-116 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09623 - - gmx:100809963 1426.77