Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09620 ATGGCTTTTGCTTCTTCTGTTGTGTCTTTGAAAAAATATGATGTTTTTCTTAGCTTTCGGGGTGAGGATACTCGCAGTAACTTCACAAGTCATTTGCATGATGCTTTGAGCCGAAAGAAAGTTGAGACATTTATAGATTATGAGCTTGAAAAAGGAGATGAGATCTCACCAGCACTCATCAAAGCCATTGAGGAGTCACATGCATCTATACTCATCATCTCAGAAAACTATGCTTCCTCAAAATGGTATCCATCACATGTGAGGAAGCAGACAGGGAGCTATGAGAAAGCCTTTGCAAAACATGAGGGAGATTTGAAGCTCAACCAGGACAAGGTTCAGAAATGGAAAGCTGCTCTAACTGAAGCAACCAATTTAACTGGCTGGGACTCTAGAACTTACAGGAATGAATCTGAATTCATTCAGGACATTGTCAAAGATGTTTTGCAAAAAGTGAAGTCAAGGTACCCAAATCAATTGAAGGGACAGGTTGGAATTGAGAAGAATTATGTACCAATTGAACGATCACTGGAAATTGGTACAAGTGAAGTTCGAATGATTGGAATATGGGGCATGGGTGGCATAGGGAAGACCGCCCTTACTACTGCTTTATATGCCAAATTGTCTACTCAATTTGAAGGTCATTGCTTCCTTGCAAATAAGCATCCTGAAATTGCATTTGAAGGTCTATCAGAAAGTGCTGTAAAATATTGCAAAGGTGTTCCTTTGGCTTTAGAAGTTTTGGGTGCACATCTTCGTTCAAAGAGCAAAGCAGCATGGGAAGATGAATTGAGAAAGCTCCAAAAGTTTTCCAATGTGGAAATTCATAAGGTGTTAAAATTGAGTTATGATGACTTCGATTCTACTCAGAAGGACATATTTCTAGACATTCCGTGCTTCTTCAGAGGATGGTCTAGAGAACTTGTAACAAGTATATTGGAAGCTTGCGATTTCTTTGCAACAAGTGGGATAGAAACCCTTGTAGACAAAGCTCTCATAACCATTTCACATTACCAGACAATAGAAATGCATGACTTAATACAAGAAATGGGTCGGGAGATTGTTAACCAAGAATCTATCAAAAACCCTGGAAAACGAAGAGAAAACAGTTTCGTGTACACTTGTTCTAGGAACGAAGAGGAGCTGAATAGATGCTTAAAGGAGTGGCAAGAGAAGGGTTTTTCGGTTTCTGGGTCGATTTGTGATGCGTCTTCTCCACCCCAGAGAGAGAAGCTTATTCAACAAATGGCTTCTGCCTTCAACGACAAGCTCAACATACTTTTCAACACTGATTATGTGGGGAGAGAAGTTTATGGAGGAAATGTGGGGGAGAGTATCTTTGATAAGAGGGTGAGGTTGGGCATAATTTTCAATATGTCTGATGTTGAGAAGAATCTGCATTTGAGCTTAGATTCCTTTAAAAGGATGACTAACTTAAGATATCTCATATTCTATTATGGGGAGATTGATGAACCTGAGACTAAGGTGTACCTTCCTAACAATTTGGAGTTTTTGTCTGATAAATTGAGGTGCCTTCGTTGGGATGCATTTTGTCTTGAGTCTTTGCCATCTACCTTTTCTTCTGAAATGCTTGTAGAGTTTTCCATGCGTGAAAGCAAGCTTAAAAAGCTTTGGGATGGAGTTCAGAATCTTGTAAATTTGAAGAAAATTGACCTTTCCCTCTCCATACACCTGGTTGAGATCCCAGACTTATCAAGGGCTACAAATCTTGAAATAGTGCGACTTAGTTATTGTTCAGGCTTGCGTAAGCTCCATCCATCCATTTTATCTCTCCCCAAGCTTACAGGTCTAGATTTAACAGGCTGCAGACAGATTGAAAGCCATGAAATCAATGTTCAATCAAAATCCCTCCGTTTCCTAGGACTTAGTGGTTGTTTATCTATCAAGGAATTTTCAGTGATATCAAAGGAAATGACAGAGCTGATTGTAAGTGGGACCGCTATACGTGAATTGCCACCATCAATTTGGCATAATAGCAAACTCATTTCTATTTGCCTACAACGATGTGGCAATCTTAACATTACTAGGAACAAGTTATCTAATCATCCAAGATTGTGGTCTCTCATACAAATGAACCTTTATGGGTGCACACAAATCGATGCATTGGATCTGCAGTTCATCTTTGATGTCATGCCACAGCTTCCATCATCCCTGGAAAAGTTGAGTGCCTTGAATTGCACTTCTCTAGAGGGAGACTTCACTACTCATAGGCTAGTGAATGAGCACATGTTTCAAAACTTGCCCGAAAAGGGTTATATCATTAAGTCTGCTGTATTCCCTGGAGCCCAAGTTCCGGATTTGTTTAGCTTCCGTACATCAGGGGCTTCAATAACAATTTCTCATGATCCAAAAGTTCATTTGCAGGGTTTCATTTTTTGCGTCATTCTTTCTGATGGAATCTTCGATGGTATCAGTGAGGTAATTATTAATATTATCTCTGAAAACGGCCAAGTGGTTGGAGAACACGGTCACCATCTATGGGATAAAAGTTTGATTTCAGATCATGTGGTGTGTCGGTATGGTAACAATTTCAGATCATTTGATCAGTGCAAATTATCATTTGATTTCAAATTACAATCGTATTTTGGAGAACGATCAACGGTGGGGATAAAGGGGTGTGGGGTCTTCCCGGTAGAGGAAGAGCTTCTTACTCGTAGAAACAAGAGGAAGAGAGAACTTGACTGA 2703 0.3981 MAFASSVVSLKKYDVFLSFRGEDTRSNFTSHLHDALSRKKVETFIDYELEKGDEISPALIKAIEESHASILIISENYASSKWYPSHVRKQTGSYEKAFAKHEGDLKLNQDKVQKWKAALTEATNLTGWDSRTYRNESEFIQDIVKDVLQKVKSRYPNQLKGQVGIEKNYVPIERSLEIGTSEVRMIGIWGMGGIGKTALTTALYAKLSTQFEGHCFLANKHPEIAFEGLSESAVKYCKGVPLALEVLGAHLRSKSKAAWEDELRKLQKFSNVEIHKVLKLSYDDFDSTQKDIFLDIPCFFRGWSRELVTSILEACDFFATSGIETLVDKALITISHYQTIEMHDLIQEMGREIVNQESIKNPGKRRENSFVYTCSRNEEELNRCLKEWQEKGFSVSGSICDASSPPQREKLIQQMASAFNDKLNILFNTDYVGREVYGGNVGESIFDKRVRLGIIFNMSDVEKNLHLSLDSFKRMTNLRYLIFYYGEIDEPETKVYLPNNLEFLSDKLRCLRWDAFCLESLPSTFSSEMLVEFSMRESKLKKLWDGVQNLVNLKKIDLSLSIHLVEIPDLSRATNLEIVRLSYCSGLRKLHPSILSLPKLTGLDLTGCRQIESHEINVQSKSLRFLGLSGCLSIKEFSVISKEMTELIVSGTAIRELPPSIWHNSKLISICLQRCGNLNITRNKLSNHPRLWSLIQMNLYGCTQIDALDLQFIFDVMPQLPSSLEKLSALNCTSLEGDFTTHRLVNEHMFQNLPEKGYIIKSAVFPGAQVPDLFSFRTSGASITISHDPKVHLQGFIFCVILSDGIFDGISEVIINIISENGQVVGEHGHHLWDKSLISDHVVCRYGNNFRSFDQCKLSFDFKLQSYFGERSTVGIKGCGVFPVEEELLTRRNKRKRELD. 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09620 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 296 IPR027417 -
Seca4g09620 900 Pfam Leucine Rich Repeat 530 548 IPR011713 -
Seca4g09620 900 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 128 IPR035897 -
Seca4g09620 900 Gene3D Ribonuclease Inhibitor 505 698 IPR032675 -
Seca4g09620 900 SUPERFAMILY "Winged helix" DNA-binding domain 273 358 IPR036390 -
Seca4g09620 900 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 367 447 IPR036291 -
Seca4g09620 900 Gene3D - 84 157 IPR035897 -
Seca4g09620 900 Gene3D - 9 83 IPR035897 -
Seca4g09620 900 Gene3D - 348 478 - -
Seca4g09620 900 PRINTS Disease resistance protein signature 595 611 - -
Seca4g09620 900 PRINTS Disease resistance protein signature 185 200 - -
Seca4g09620 900 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 222 698 IPR044974 GO:0006952
Seca4g09620 900 SUPERFAMILY L domain-like 464 736 - -
Seca4g09620 900 ProSiteProfiles TIR domain profile. 11 151 IPR000157 GO:0007165
Seca4g09620 900 Pfam TIR domain 12 82 IPR000157 GO:0007165
Seca4g09620 900 Pfam TIR domain 84 158 IPR000157 GO:0007165
Seca4g09620 900 Gene3D - 208 286 IPR042197 -
Seca4g09620 900 SMART till_3 12 125 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09620 Seca-Chr4 226698736 226708302 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09620 174 736 WRKY Transcription Factor Family AT5G45050 28.548 2.79e-48 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09620 - - gmx:100809480 412.535