Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09617 ATGCAGATGAATAACAATGTGTCAGAAGAAGCTCACAAGACAGATCATAGTTGTGCAAATTCATCAAATGATCATTCAACAAGTCATGGTAGAAAGGTGAATAATAATCAAGCAGCAAAAGATGCCTTCACAAATGAGCAAACAACCAATAGAGAAGGACACATAGATCAATGTTATAAAAATAATGCAAAGATGGCAAGTAAACCAGCATCTAAGCCTCAGAAATTAGAATCACATATAAGGAACATTTCTGAATTTACCACTAATCAACGCCCAAGTCCAGGTGCAAGAATGCCTTCAAATTGTGACCCTTCAACCACCTCATCAGGAGTAACAACAGGAACTGCAAGAGGGTTTGCTATGTCTTCAAAGACCACAAATCATGGTCAAGGGAGTGGAACTAGCTCTCGTAGTGACAGTTTAGAGAGTAGCAGTCAACACATTAAGCCACACACTGGAGGTGATGTAGGGTGGGATGCAATTAACAAAGTTTCAAGAGGCTCCAATCTTAACCTTAGCCATTTCAGGCTTTTGAAACGTGTTGGATATGGAGATATTGGAAGTGTATATCTTGTGGAACTTAAAGGAACAGGAACCTTCTTTGCCATGAAAGTAATGGATAAGGCTTCTCTTGCAAGTAGAAACAAGCTTCTGAGAGCACAGACAGAAAGGGAGATTCTTGGACTTCTTGACCACCCTTTCTTGCCTACATTATATTCTTATTTTGAGACTGAGAAGTATAACTGTTTGATCATGGAATTCTGTAGTAGTGGTAGTCTGCATTCTCTTCGATTGAAGCAACCTAACAAGCATTTCACAGAAGAAGCTGCACGGTTTTATTGTTCAGAGATTTTGTTAGCTCTTGAGTACCTACACATGCTAGGCATTGTGTACAGAGACCTAAAACCAGAGAATGTTCTAGTCAGAGATTCAGGTCACATAATGCTATCAGATTTTGATCTATCACTCCGCTGTTCAGTGAGTCCAACACTTGTAAAATCATCCTCTGCACATGTAAGCAGTAATAGCACATCAGGGAGCATTTTAGATGATGAACATGCAGTACAAGGTTGTATGCAACCATCAAGCTTCTTCCCAAGGATTTTACCTTCAAAAAAGAACCGCAAATCAAAGTCAGATTTTGGCCTTATGGAAGGAGGTCGTCTTCCAGAACTAATGGCAGAGCCTACAAATGTGCGCTCAATGTCCTTTGTAGGGACACATGAGTATCTTGCACCAGAGATTATCCGTGGTGAAGGACATGGTAGTGCAGTGGATTGGTGGACATTTGGGATCTTTTTATATGAGCTTTTGCATGGAACAACACCTTTTAAGGGTGCAGGAAACCGTGCTACACTCTTTAATGTTGTAGGACAACCCTTGAAGTTCCCAGATGCTCCTCATGTTAGTCCTGTTGCAAGAGACCTTATTAGAGGGTTGTTGGTGAAAGAACCTCATAAAAGGTTTGCTTATAAGAGAGGTGCTACAGAGATAAAACAACACCCCTTTTTTGAAGGAGTGAATTGGGCTCTAATTAGAAGTGCTACACCTCCTATTATACCTGAACCTGTAGATTTTTCACAGTATGCTAGCAAAGAGACAGTGAACACAACAGACAAGAAGATGGCAGACATTGCAAGTGATAAAAACATCAATACACAAACTGATTCTTCTTATGAAGAGTTTGAGTATTTTTAG 1698 0.4005 MQMNNNVSEEAHKTDHSCANSSNDHSTSHGRKVNNNQAAKDAFTNEQTTNREGHIDQCYKNNAKMASKPASKPQKLESHIRNISEFTTNQRPSPGARMPSNCDPSTTSSGVTTGTARGFAMSSKTTNHGQGSGTSSRSDSLESSSQHIKPHTGGDVGWDAINKVSRGSNLNLSHFRLLKRVGYGDIGSVYLVELKGTGTFFAMKVMDKASLASRNKLLRAQTEREILGLLDHPFLPTLYSYFETEKYNCLIMEFCSSGSLHSLRLKQPNKHFTEEAARFYCSEILLALEYLHMLGIVYRDLKPENVLVRDSGHIMLSDFDLSLRCSVSPTLVKSSSAHVSSNSTSGSILDDEHAVQGCMQPSSFFPRILPSKKNRKSKSDFGLMEGGRLPELMAEPTNVRSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGIFLYELLHGTTPFKGAGNRATLFNVVGQPLKFPDAPHVSPVARDLIRGLLVKEPHKRFAYKRGATEIKQHPFFEGVNWALIRSATPPIIPEPVDFSQYASKETVNTTDKKMADIASDKNINTQTDSSYEEFEYF. 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09617 565 FunFam Serine/threonine-protein kinase D6PK-like 173 258 - -
Seca4g09617 565 ProSiteProfiles Protein kinase domain profile. 175 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09617 565 SMART serkin_6 175 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09617 565 FunFam serine/threonine-protein kinase D6PK-like 259 326 - -
Seca4g09617 565 MobiDBLite consensus disorder prediction 1 53 - -
Seca4g09617 565 CDD STKc_phototropin_like 173 525 - -
Seca4g09617 565 FunFam Serine/threonine-protein kinase AGC1-7 397 522 - -
Seca4g09617 565 Gene3D Transferase(Phosphotransferase) domain 1 379 522 - -
Seca4g09617 565 Pfam Protein kinase domain 380 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09617 565 Pfam Protein kinase domain 176 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09617 565 MobiDBLite consensus disorder prediction 86 150 - -
Seca4g09617 565 MobiDBLite consensus disorder prediction 20 53 - -
Seca4g09617 565 ProSiteProfiles AGC-kinase C-terminal domain profile. 505 565 IPR000961 GO:0004674|GO:0005524|GO:0006468
Seca4g09617 565 PANTHER FLIPPASE KINASE 1-RELATED 18 533 - -
Seca4g09617 565 Gene3D Transferase(Phosphotransferase) domain 1 259 329 - -
Seca4g09617 565 ProSitePatterns Serine/Threonine protein kinases active-site signature. 296 308 IPR008271 GO:0004672|GO:0006468
Seca4g09617 565 Gene3D Phosphorylase Kinase; domain 1 173 258 - -
Seca4g09617 565 SUPERFAMILY Protein kinase-like (PK-like) 172 537 IPR011009 -
Seca4g09617 565 MobiDBLite consensus disorder prediction 86 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09617 Seca-Chr4 226634279 226637287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09617 55 565 AGC Kinase Gene Family AT1G79250 63.178 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca4g09617 Pkinase 3.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09617 - - gmx:100802478 832.402