Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09608 ATGGAAATTTGGAGGTCAATTATCCTAGGGTGGAAAGTGATGAAGATGTTGATGTCCAACCTGTGGAGTATGTTGATGCCCCTATTTATGTGGGAAGTTACTTTGACAAAGGCAGCTGCTTCCGGTGCTAACGCTTTGCTCATACCTGCTAGGATTGTGAGGGACATATTGGACAAGAATCAGGATGTTGTGACTGTCATAGATGAGGGTAGTCAATTAATTCCATGCAAGCTTCTGAAGCCTAAAAGACGACCAAGTGAGCGGTACCTATCCAGTGGGTGGTATGAGTTTATTTGGGGAAAGCAATTGAAGGCTGGGGATAAGATAAGATTTTACTCAGATGATAGTATGGAATCTTTGTCTGCGGTTGTAGATCGCATTTGA 384 0.4297 MEIWRSIILGWKVMKMLMSNLWSMLMPLFMWEVTLTKAAASGANALLIPARIVRDILDKNQDVVTVIDEGSQLIPCKLLKPKRRPSERYLSSGWYEFIWGKQLKAGDKIRFYSDDSMESLSAVVDRI. 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09608 127 Gene3D - 22 125 IPR015300 -
Seca4g09608 127 SUPERFAMILY DNA-binding pseudobarrel domain 29 120 IPR015300 -
Seca4g09608 127 Pfam B3 DNA binding domain 32 120 IPR003340 GO:0003677
Seca4g09608 127 ProSiteProfiles B3 DNA-binding domain profile. 31 127 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09608 Seca-Chr4 226513937 226514636 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca4g09608 B3 1.8e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09608 - K01187 lja:Lj6g3v0497350.1 55.4546