Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09607 ATGCTTCTGCTTGATGAAAAGAGTGGAAGGATTCAAGCATCCGTGAAGCAAGGTCTCTTGCCAGACTTTGAACCCCAGTTGAAAGATGGGAGGTGTTATATAATGCAGAAATTATTGGTTGGTCGAAATGAAACTCTGAACCCTACTATCAATGGCAAATTTAAGCTAGGATTTATGAAAGTCACACAAATTACTGAAACAGAAGATGGAAATATCCCTCCTAATGCATTTGATTTTGTTCCTTTTCCTCAAATCTTAAGTAGTGTTAAGGAGGGACAGCTTTTGGAATTAATTGGTCATGTGGTGGAAAAGTCTGACATCAAAGAAATTACTTCAGCTGGTGGGAAAACAAATCGATTAATTGATGTTGTATTGGAAGATCTTGAATCAAACAAGTTACCCTGCACTTTGTGGGGGACATTTGCTGATAATATGAATCAGTATTTGATAGAACAAGGTGATAAGGGTCCAGTCATAGTTATATTACAATTGTGCAAGCTGAAAGTATCTAAAGGCACAAAGGGCATTTCAAATGCATTTAATGAGACTAAGCTGCTTATTAATCCAAAATTCAAGGAGGATCTTCAATATAAAGAAAAGTTGCAACATGCTGATGAACCCCTTAGCCAAGTGGTGAGTTATTCCTCTGGACAAGGTGTCATGTCTTTTCGTGAAGACATTTTAAGTACTGAAAGGATGACAATTTCAGATATTATAGACTGCTCTCGGGATTGTTTTGTTGCTGTTTTGGCTACAATATTTGAGATTGATTATCATAAAGGATGGTTTTACAAAGCATGTAGAAAATGTAAGAAGAAAGTTACATCAGTTGGGAAAAAATACTCTTGCCTGAAATGTGAGGGGATGATTGCAAAGATATATTGTTTTAAGCTGCAGGTCTATGTCATTGATTCAACCGGATCAGCTCAATTCTCTTTATTTAATCGAACAATTTCTAATTTGATAGGGAAGTCTGCTTCTGAGCTCGTTAATCCAACAACCAAGGGAAATAACTCTGATGCTTATCCTATTGAGTTGGATCAACTCAAGGATAAAGAGTTTTTGTTTAAAGTCTCTGTAAGTGAATACAACATTGAGCAGAGTTGGCAAGGTTATCCTGTTAGCAATATGACTGATGATGCAGAGTTAATTGAAGAGTTTAAGAATTTGCATTCTGTTAAGGTAATTGATTCTTATATTAATTAG 1206 0.3574 MLLLDEKSGRIQASVKQGLLPDFEPQLKDGRCYIMQKLLVGRNETLNPTINGKFKLGFMKVTQITETEDGNIPPNAFDFVPFPQILSSVKEGQLLELIGHVVEKSDIKEITSAGGKTNRLIDVVLEDLESNKLPCTLWGTFADNMNQYLIEQGDKGPVIVILQLCKLKVSKGTKGISNAFNETKLLINPKFKEDLQYKEKLQHADEPLSQVVSYSSGQGVMSFREDILSTERMTISDIIDCSRDCFVAVLATIFEIDYHKGWFYKACRKCKKKVTSVGKKYSCLKCEGMIAKIYCFKLQVYVIDSTGSAQFSLFNRTISNLIGKSASELVNPTTKGNNSDAYPIELDQLKDKEFLFKVSVSEYNIEQSWQGYPVSNMTDDAELIEEFKNLHSVKVIDSYIN. 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09607 401 Pfam Replication factor-A C terminal domain 246 364 IPR013955 -
Seca4g09607 401 Gene3D - 1 70 IPR012340 -
Seca4g09607 401 PANTHER OS03G0429900 PROTEIN 4 367 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca4g09607 401 SUPERFAMILY Nucleic acid-binding proteins 230 376 IPR012340 -
Seca4g09607 401 CDD RPA1_DBD_B_like 97 193 - -
Seca4g09607 401 Gene3D - 217 392 IPR012340 -
Seca4g09607 401 Gene3D - 71 208 IPR012340 -
Seca4g09607 401 SUPERFAMILY Nucleic acid-binding proteins 77 203 IPR012340 -
Seca4g09607 401 CDD RPA1_DBD_C 246 365 IPR047192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09607 Seca-Chr4 226508696 226511731 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09607 3 367 Core DNA Replication Machinery Family AT5G08020 24.474 5.47e-22 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09607 - - mtr:112422829 311.997