Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09590 ATGGAAAAAATGATTAGGTTTGCTTTTCTGTTTGGCTTTATGAGCATGCATATAATTTTACTAGGGAATACAACAGCTGATGAGAGTTCTGATGTTAAGGGCATAATAGGAGCTATTTTAGATAGCAGCTCTCGCATTGGCCAAGAGCAAGCAGTGGCTTTGAAAATGGCATTGGAGGACTTCTATCATTACAGCAATCAGAGTTATAATCTTTATATAAGGAATTCTGAAGGGGATCCTCTTCAGGCAGCTCTTGCAGCCAGAGATCTTATTGATAAGCAAAAGGTGCAAGCTATCATTGGACCACAAACATGGGATGAGATGTCTTTAGTGGCTGAAGTCTGCAGCCAAAAGAGCATACCACTCCTTTCTCTAGCAGATGCAACTCCAGAATGGGCATTGGAGAAGTGGCACTTCCTGCTGCAAGCCTCACCTAGCCAAATTATGCAGATGAAAGCTATAGCTGAAATTGTTAAGTTCTGGAAACCATATAAGGTTAGCATAATATATGAAGATGGAGATTCCTCATCCACACAAGTTTTATCACAGCTCTCTGGATCTCTCGTAGAACTTGGCACAGAGTTAAGCAATGTTCTATCCATTTCACCTTTAATTTCCTCTTCATCATTATCCCAAAAACTTGAGAAGCTAAGAGAAGGGCATTGTGCAGTCTTTATTGTCCATTTGTCTTTTCCTTTGGCACTACACCTGTTTGAAACTGCAAAGAAAATGAATATGGGGGAAGGTAATGTATGGATTACTACTGGTACCTTCACAAGCCTTGTCCATTCCATGAATGCCTCCACCATCTCCAATATGCAAGGGATTATTGGAGTCAAGAGCTACATCCTAAATCAGTCGTACCAATATGAGAACTTTTACCAAAGGTTTCGTAAAAACTTTAGCTTAGAGAATTTTGAAGAGTTTAATTATGAACCTGGGATCCTTGCAGCTCAGACTTATGATGCTGCATGGACTGTGGCTAAGGCAATGATAGAAACCAACCAAAAAGGGGGTCAACTTTTGCTAGATAAGATTTTGCATAGTGATTTTACAGGCTTAAGTGGAAAAATTCAGTTCACTGACCATAAAATAGCTCCAGCAAATACTTTTCAGATCATTAATGTGATTGGGAAGAGCTACAGGGAAATTGGGTTCTGGTTAGATGGACATGGTTTCTCAAAAACTTTTGGCCAAAATGATTCTTACAGTCCTTCAGTGAAGGAATTAGGAAGAGTGGTCAATCCAACATGTACTAAACGACTAAGAATTGGTGTACCCTCCACATCAACATTCAAACAGTATGTCAATGTTATTCAAAATAATTCTGAAAATGTTACCTCCTTCAAGGGATTTGCTATAGACCTTTTCAAAGAAGTAAAAAAGGAATTGCCATACCATCTGGAATATGATTTCTTTGCCTTCAATGGCACATATGATGAATTGGTGAAGCAAATTTATTTCAAGACATTTGATGCAGTTGTTGGTGATGTAACAATTGTGTCCACACGTTATGAATATGCTTCATTTACTCAGCCCTATACTAATCCAGGAGTGATGATGATTGTTCCTGTTAAATCAAAAGAAGGCAACAAAATGTGGTTATTCATGAAGCCTTTCACCAAGCTCATGTGGATTCTAATATTGGCCATCATTGTCTACAATGGCATTGTTATTTGGATTATTGAAAGAAACCACCGCCCTGAACTTAAGGGCCCTATTCTGCATCAAACGACAACCATACTGTGGTTGGCTTTCGTTTCTCTGTTCTCTTTTAATGCGGACAAGTTACATAGCAACTTATCAAGGGTGGCAATGGTGGTGTGGCTTTTTGTGGCTCTAATCATTACACAGACTTACACAGCTAGCCTTGCAAGCATGTTAACTGTTGAACGGTTTGAACCCACTATAGACAGCCTTCAACAACTAAAGAACTCCAATGCCAAGGTAGGATGTGATCAAGGATCCTACTTGCAAAGATATCTCCAGGATGCATTGGATTTCAATGCTGAAAACATCAAGCAATTTGACTCACAGCATGACTATGCTGATGCTCTAGGAAGGAAAGAAATAGCAGCTGCCTTCCTCGATGCTGCTGAGGCCAAAATTTTCCTTGCAAATTACTGCAAAGGGTTTGTTCAAGTTGGACCTACGCACAAAATTGGAGGATATGGATTTGTATTGCTTCAACAATTCTTTTACTTTTCTCTGTATGAATTTCTAGCCCTCAATCACAGCCAAGTTTATGTTAACCCTGTTGCATTGTCTATGCAGGTATTTCCAAAGGGTTCTCCATTGCTTGATGATATAAACAAAGTTCTACTAAACATATCAGAAAGTGGAACACTACGTGATCTAGAAAACAGTATGCTTGCATCAGAGGAATGCAAAGACACAGAGCCAGGTTCAGAAACTACTAGTCTTAGCCCTTGCAGCTTCTTGGTGCTCTTCATCTTAACTGTAGGCACATCAACAACTGCTCTCTTGATTTACATTTTCCATGTGAATTATTTATGCCATGGACACAGAACAGTGTGGAGTCTAATGATGGCTGTGATTAAAAGTTGGGGATCTCAAAAGAGACTATTTTCAAGAAGAGTCCACAATTTTGCAGAATATCCTTTAAACTCTCCCAATATTTCAACTTTAGCTTAA 2655 0.391 MEKMIRFAFLFGFMSMHIILLGNTTADESSDVKGIIGAILDSSSRIGQEQAVALKMALEDFYHYSNQSYNLYIRNSEGDPLQAALAARDLIDKQKVQAIIGPQTWDEMSLVAEVCSQKSIPLLSLADATPEWALEKWHFLLQASPSQIMQMKAIAEIVKFWKPYKVSIIYEDGDSSSTQVLSQLSGSLVELGTELSNVLSISPLISSSSLSQKLEKLREGHCAVFIVHLSFPLALHLFETAKKMNMGEGNVWITTGTFTSLVHSMNASTISNMQGIIGVKSYILNQSYQYENFYQRFRKNFSLENFEEFNYEPGILAAQTYDAAWTVAKAMIETNQKGGQLLLDKILHSDFTGLSGKIQFTDHKIAPANTFQIINVIGKSYREIGFWLDGHGFSKTFGQNDSYSPSVKELGRVVNPTCTKRLRIGVPSTSTFKQYVNVIQNNSENVTSFKGFAIDLFKEVKKELPYHLEYDFFAFNGTYDELVKQIYFKTFDAVVGDVTIVSTRYEYASFTQPYTNPGVMMIVPVKSKEGNKMWLFMKPFTKLMWILILAIIVYNGIVIWIIERNHRPELKGPILHQTTTILWLAFVSLFSFNADKLHSNLSRVAMVVWLFVALIITQTYTASLASMLTVERFEPTIDSLQQLKNSNAKVGCDQGSYLQRYLQDALDFNAENIKQFDSQHDYADALGRKEIAAAFLDAAEAKIFLANYCKGFVQVGPTHKIGGYGFVLLQQFFYFSLYEFLALNHSQVYVNPVALSMQVFPKGSPLLDDINKVLLNISESGTLRDLENSMLASEECKDTEPGSETTSLSPCSFLVLFILTVGTSTTALLIYIFHVNYLCHGHRTVWSLMMAVIKSWGSQKRLFSRRVHNFAEYPLNSPNISTLA. 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09590 884 Pfam Ligand-gated ion channel 789 822 IPR001320 GO:0015276|GO:0016020
Seca4g09590 884 FunFam Glutamate receptor 533 671 - -
Seca4g09590 884 Gene3D - 414 531 - -
Seca4g09590 884 PIRSF IGluLR_plant 2 731 IPR017103 -
Seca4g09590 884 PIRSF IGluLR_plant 758 866 IPR017103 -
Seca4g09590 884 Gene3D - 532 668 - -
Seca4g09590 884 Pfam Receptor family ligand binding region 52 377 IPR001828 -
Seca4g09590 884 CDD PBP1_GABAb_receptor_plant 36 397 IPR044440 -
Seca4g09590 884 SMART GluR_14 421 793 IPR001320 GO:0015276|GO:0016020
Seca4g09590 884 Gene3D - 37 368 - -
Seca4g09590 884 SUPERFAMILY Periplasmic binding protein-like I 36 388 IPR028082 -
Seca4g09590 884 CDD GluR_Plant 420 791 - -
Seca4g09590 884 FunFam Glutamate receptor 150 311 - -
Seca4g09590 884 SUPERFAMILY Periplasmic binding protein-like II 419 728 - -
Seca4g09590 884 Pfam Bacterial extracellular solute-binding proteins, family 3 448 788 IPR001638 -
Seca4g09590 884 FunFam Glutamate receptor 417 532 - -
Seca4g09590 884 Gene3D - 146 387 - -
Seca4g09590 884 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 36 837 IPR015683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09590 Seca-Chr4 226161903 226167491 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09590 36 834 Ion Channels AT5G27100 30.282 1.40e-116 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09590 - - gmx:100776939 1251.5