Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09589 ATGCATAGGTTTGCTTTTCTGTTAGGCTTTATCAACATACAGATAATTTTCATAGGGAATACAGCAGCTGATAAGAGTTCTGATGTTAAGGGCATAATAGGAGCTATTTTAGATTGCAGCTCTCGTATTGGCCAAGAGCAGGCAGTGGCTATGAAGATGACATTGGAGGAGTTTTATCATTACAACAATCAGAGTTTTGCTCTGTACATAAGGAACTCTGAAGGGGATCCTCTTCAGGCAGCTCTTGCAGCTAGAGATCTTATTGATAAGCAAAAGGTGCAAGCCATCATTGGACCACAAACATGGGAAGAGACATCTCTAGTGGCTGACATCTGCAGCCAAAAGAGCATACCCCTTCTTTCTCTAGCAGATGCAACTCCAGAATGGGCACTGGAGAAGTGGCACTTCCTGCTGCAAGCCTCACCTAGCCAAATTATGCAAATGAAAGCTATAGCTGAAATTGTTAAATCTTGGAAATCATATAATGTTAGCATAATATATGAAGATGGAGATTCATCATCCCTGGAAGTTTTATCTCAGCTCTCTGGAGCTCTCAAAGAAGTTGGCACAGAATTAAGCAATGTTCTAGCTGTCCCACCTCTAATTTCCTCTTCATTGTCCCAAAAACTTGAGAAGTTAAGAGAAGGGCAGTGTAGAGTCTTTATTGTCCATTTGTCCTTCCCTTTGGCACTACACCTGTTTGAAACTGCAAACAAAATGAATATGATGGAGGAAGGTAATGTATGGATTACTACTGGTACCTTCACAGGTCTTGTTCATTCCATGAATGCCTCCACTATCTCCAATATCCAAGGGATTATTGGAGTCAAGAGCTACATCCCAAATCAATCGCACCAATATGAGAACTTCTACCATAGATTTCGCAAAAAATTTAGCTCACAGCATTTTGAAGAGTTTAATTATGAACCTGGGATCTTTGCAGCCTATGCTCATGATGCTGCACGGACTGTGGCTCAGGCAATGAGGGAAACCAACCAAACAGGGGGTCAACTTTTGCTAGATAAGATTTTGCTAAGTAATTTCACTGGCTTAAGTGGAAAAATTCAGTTCTATGACTATAAAATAGCTCCAGCACATACTTTTCAGATCATTGATGTGATTGGGAAGAGCTACAGGGAAATTGGATTCTGGTCAGATGGACTTGGTTTCTCAAAAACTTATGGCAGAAATGCTTCTTACAGTTCTTCGGTGAAGGAATTGGGAAAAGTGGTTAATCCAATATGTGCTAAACGACTAAGAATTGGTGTCCCCTCTTATGCAACATTCAAACCATATGTCGATGTTATTCAAGATGACTCTCAAAGTGCTCCCTCCTTCAAGGGAATTGCTATAGATCTTTTCAAAGAAATAGTAAAACAATTACCATACCATTTGGAATATGATTTCTTTGCCTTCAATGGCACACATGATGAATTGGTGAAGCAAATTTATTGGAAGAAATATGATGCAGCTGTTGGTGATGTAACAATAGAGTCCGCGCGTTATGAATATGCTTCATTCACTCAGCCCTATACTGATCCAGGAATGGTGATGATTGTTCCTGTTCAATCAGAAACAGGCAACAGAGCGTGGTTATTCATGAAGCCTTTCACAAAGCTCATGTGGATTCTAATATTGGTCATCATAGTCTACAATGGCTTTGTTGTATGGATAATCGAAAGAAACCACCGCGCTGAACTTAGAGGTCCTATTCTGCATCAAACGATAACTGTACTGTGGTTGGCTTTCATTTCTCTGTTCTCTCTGAATGGGGACAAGTTGCGTAGCAATTTGTCGAGGGTGGCAATGGTGGTCTGGCTATTTGTGGCTCTAATCATTACACAGACTTACACAGCTAGCCTTACAAGCATGTTGACTGTTGAACGGTTTGAACCCACTGTAGACAGCATTCAACAACTACAAACCAGCAATGCCATGGTAGGATGTTATGGAGGAACCTACATGAAAAGATATATCCAGGAGGCATTGGACTTCAATGCAGAAAACATCAAGCAATATGACTCACCGCAAAACTACAATGACGCTCTAAGAAAGAAAGAAATAGCAGCCGCCTTCTTCGATGCTCCTGCCGCCAAATTCTTCCTTGCAAAGAACTGTAAAGAGTTTGTCCAAGCTGGGCCTACGTACAAAATTGGAGGATATGCATTTGTATTGCTTCAACAATTCTTTCACGTTTCTCTTGTATGA 2208 0.4072 MHRFAFLLGFINIQIIFIGNTAADKSSDVKGIIGAILDCSSRIGQEQAVAMKMTLEEFYHYNNQSFALYIRNSEGDPLQAALAARDLIDKQKVQAIIGPQTWEETSLVADICSQKSIPLLSLADATPEWALEKWHFLLQASPSQIMQMKAIAEIVKSWKSYNVSIIYEDGDSSSLEVLSQLSGALKEVGTELSNVLAVPPLISSSLSQKLEKLREGQCRVFIVHLSFPLALHLFETANKMNMMEEGNVWITTGTFTGLVHSMNASTISNIQGIIGVKSYIPNQSHQYENFYHRFRKKFSSQHFEEFNYEPGIFAAYAHDAARTVAQAMRETNQTGGQLLLDKILLSNFTGLSGKIQFYDYKIAPAHTFQIIDVIGKSYREIGFWSDGLGFSKTYGRNASYSSSVKELGKVVNPICAKRLRIGVPSYATFKPYVDVIQDDSQSAPSFKGIAIDLFKEIVKQLPYHLEYDFFAFNGTHDELVKQIYWKKYDAAVGDVTIESARYEYASFTQPYTDPGMVMIVPVQSETGNRAWLFMKPFTKLMWILILVIIVYNGFVVWIIERNHRAELRGPILHQTITVLWLAFISLFSLNGDKLRSNLSRVAMVVWLFVALIITQTYTASLTSMLTVERFEPTVDSIQQLQTSNAMVGCYGGTYMKRYIQEALDFNAENIKQYDSPQNYNDALRKKEIAAAFFDAPAAKFFLAKNCKEFVQAGPTYKIGGYAFVLLQQFFHVSLV. 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09589 735 Pfam Bacterial extracellular solute-binding proteins, family 3 444 724 IPR001638 -
Seca4g09589 735 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 33 725 IPR015683 -
Seca4g09589 735 Gene3D - 143 385 - -
Seca4g09589 735 FunFam Glutamate receptor 530 668 - -
Seca4g09589 735 CDD PBP1_GABAb_receptor_plant 33 392 IPR044440 -
Seca4g09589 735 Pfam Ligand-gated ion channel 541 675 IPR001320 GO:0015276|GO:0016020
Seca4g09589 735 FunFam Glutamate receptor 415 529 - -
Seca4g09589 735 Gene3D - 532 673 - -
Seca4g09589 735 Gene3D - 426 531 - -
Seca4g09589 735 SMART GluR_14 420 731 IPR001320 GO:0015276|GO:0016020
Seca4g09589 735 FunFam Glutamate receptor 147 308 - -
Seca4g09589 735 Pfam Receptor family ligand binding region 49 374 IPR001828 -
Seca4g09589 735 SUPERFAMILY Periplasmic binding protein-like I 32 386 IPR028082 -
Seca4g09589 735 SUPERFAMILY Periplasmic binding protein-like II 416 725 - -
Seca4g09589 735 Gene3D - 33 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09589 Seca-Chr4 226137513 226142168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09589 6 728 Ion Channels AT2G29120 29.948 1.09e-111 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09589 - - gmx:100776939 1099.35