Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09585 ATGGATGAAATGACTGGTTTGCACACCAATCAACAATGGAATGGCTATTTTCATTCTGAAAGTAACTATTTCAGAGGTCAGCCTAGTGTTAGCAGAGCTTCAGGCCATGTTTATGACCATGTGAGGATGACACGACTTAGAAGTAAAAGAGCTACCCCTAATGCTATAAACATTGATGGCATACTTTTTATGGATAGTCCATCAAATTTGATGTATAGAGGAAATGGGGTCCCTTCACCTGTGGAAATTGGACCACATGGTAGTTCATGGAGCAGATCAGGTGAGTCTATGATGGTGCATGGCCATAACCATTTGATCAGAGGAAACTATTTAGGCCAGCATTTTCAGCCAGATGCTTCTTCTTGGCAAGACCAACAGTTGAATAGTAATATCAACGATAGTCATGCTATAGCTTGGAACCAGTCTCTTCCAATGGTCTATGTACAAGCACCCAATATTAATGAAAGTTCATCAGGGAATTCAAGTATGGGTCTGCGGAGATATCATGAAGCAGCTGGTAGCAGAAGAGGCCTCAGGTTTCCTCATCCTCCTCTTGTCAACCCACGGCACCATAACTTTCATAATCTAACACTGCCTGCACAAGGAGTGAGAGGTCACTCTATCAACTTTCATCCTTCAGTAGCTGCAGATTCATATAGAGTTCCAACAAATTCATCACGCAGTGCTGCAACATCTAGACAGAATGGTTTTGAGATGGGTGCTGGGTATGTTGGCCTTGCACCACCTGCAGGTCCACGGTCATACAGAGCTCGTAGAGTAGGTACAACTCTTGGTCGTCAACATCAAAATCTTCCTCCCATTATTCAAGTTGATGTAATATTTTCTATTTCTTTTAATAATTATGATGTTGCATTATTGGTTGACCATCACAGTGACATGCGCTTGGATATCGATGATATGTCTTATGAGGCAAGTAGACAAGTTTCATATTGTATTTTTTTAACCAAAGAGCTTCTTCAATTGGGTGAGCAGATTGGCAATGTAAGCACAAATTTAACAGAGGAAATGGTTATAAATCAAATGAAGACAAAGACTTATTTACATCCTGCTAATGCTGTTAATTTGGAGGAGGCAGCTTCTGAGGAACAAGAAGCTGATTCTTGTGTAATATGCCAGGATGAATATAAGAATGGAGAGAAAATTGGAATCCTTCGATGTGGGCACGAGTATCATGCAGATTGTTTAAGGCAATGGATACTTGTGAAAAATGTCTGCCCCATATGCAAATCAAAAGCATTGACTCCTTGA 1269 0.4058 MDEMTGLHTNQQWNGYFHSESNYFRGQPSVSRASGHVYDHVRMTRLRSKRATPNAINIDGILFMDSPSNLMYRGNGVPSPVEIGPHGSSWSRSGESMMVHGHNHLIRGNYLGQHFQPDASSWQDQQLNSNINDSHAIAWNQSLPMVYVQAPNINESSSGNSSMGLRRYHEAAGSRRGLRFPHPPLVNPRHHNFHNLTLPAQGVRGHSINFHPSVAADSYRVPTNSSRSAATSRQNGFEMGAGYVGLAPPAGPRSYRARRVGTTLGRQHQNLPPIIQVDVIFSISFNNYDVALLVDHHSDMRLDIDDMSYEASRQVSYCIFLTKELLQLGEQIGNVSTNLTEEMVINQMKTKTYLHPANAVNLEEAASEEQEADSCVICQDEYKNGEKIGILRCGHEYHADCLRQWILVKNVCPICKSKALTP. 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09585 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 335 420 IPR013083 -
Seca4g09585 422 ProSiteProfiles Zinc finger RING-type profile. 375 416 IPR001841 -
Seca4g09585 422 Pfam Ring finger domain 373 416 IPR001841 -
Seca4g09585 422 SMART ring_2 375 415 IPR001841 -
Seca4g09585 422 FunFam E3 ubiquitin ligase BIG BROTHER 335 420 - -
Seca4g09585 422 SUPERFAMILY RING/U-box 374 419 - -
Seca4g09585 422 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 42 420 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09585 Seca-Chr4 226118532 226121926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09585 295 420 C3H Transcription Factor Family AT2G15530 44.882 1.94e-32 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09585 K19041 - gmx:100779069 427.172