Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09581 ATGCGATTATCGCGCGAATCTGGTTCGTCATTGGAGCAGAAGAAGGCTGGTCGATCGGGTTTGCGGCTTCGGAAGAAGCACAAGAGGTTGGATGCAATATGTGAGGAGGAGTACAATCGAAACCATGGTGAACTCAATGAGGGTACTTCTGTTGGTGATGATGATGGTGGTGATGCCGGGGTTCGCCGTAGCTCTAGGGTTCGGCGTGCCCCGGTTTTGCTCGATGCCTCTCCCACTCCCTCAAAGAAGCGGCGGAGGCTGAGCAAGAATGGAATGTTGAAGGATGTAAAGGATGCCAAGAATGTAGAACGGTTGACCGAGAGTTCTGGTGGCGCAGAGGCTTCGAGAGTTTGGAGTTCAAGGTTGAGATCGAGGGTTGGAAGTGTAGGTTCTAAGGTGAAGGAGGAGAAGGAACCTCGCGGTGGGAAGAGGAAGCTGTTTGAGGATGATGTTAGAAGTAGGGTTGATGAGGAGGTGGAGGTTAGGGAGGTGGATAATAAAGAGGAATTGGAAGGTGGGATGCCAACAATAGTTAAGTCGAAGAGACCAGGGAGGATCAAAGCTACGAAGCGTGAAGAGGGACATGGAGATAAAGAGAATGAGGTTCATGAGAATTTAGATGAGACTAAGAGTCAAGAAGTGGAGCTTACATTGAACAAAGATGAGGAGAGTGCTTCAGTTTTGGAAGAAACCCAGTTGTCTGGTGGGAGTGGGAATCAGATAGAAGTATTGGATGAGAATGCCCCTATAACAACAGGGAATCAAGAGGGAGACCTATCTAACCATGTGCAAATAGAGGAGTGTAATGGCAGTATTGAACTTTCTACGGTGGAACTTGTGGATAAACAGGATGATATATTAGAGACTGCAAAGGAAGGCAAAACTGCAAGTGATGTTGCAGAAGCTGCTGAAATTTTGACAGAACACAGAGAAAATGAAGAATCTGTTGATAAGGAGGTTGACATTGATGAAAAAACCTCGCAAGATGCAAATGCTGTGGGGATGAATGAGTCCAAACAAGCTTCAAATGATAAGCCTCGCCATCAACGTATTAAAGAGGGCAGGCGGTGTGGTTTGTGTGGTGGAGGGACTGATGGTAAACCTCCTAAAAGATTAGTTCAGGATAATGGTGAGAGTGAGAATGAGGCATATAGTGGGTCTTCAGCTTCAGAGGAGCCTAATTATGATATCTGGGATGGCTTTGGCAATGAACCTGGATGGTTGGGCCGCCTCTTGGGTCCTATTGATGATCGCTATGGTATTGCTCGAATATGGGTTCATCAGCACTGTGCCGTATGGAGTCCAGAGGTTTATTTTGCTGGCTTGGGATGCTTAAAAAATGTTAGGGCTGCACTTTGTAGAGGAAGAGCGTTGAAGTGCACACGTTGTGGGAGGCGAGGAGCTACCATTGGTTGTCGTGTTGATCGTTGTCCAAAAACATATCACTTGGCATGTGCAAGGGCAAATGGTTGCATCTTTGATCATCGTAAATTTCTTATAGCATGCACAGATCATCGGCATCTCTTCCAACCTCATGGTAATAAATATTTAGACCGGATAAAGAAGTTGAAGGCTAGGAAAATGAAGTTGGAGGTGAGGAAGCTTTCAAATGATGCATGGAGAAAGGACATTGAAGCAGAAGAGAGATGGCTGGAAAATTGTGGTGAGGATGAAGAATTTTTGAAACGTGAAAACAAGAGGCTTCATCGTGATTTATTGAGAATAGCCCCTGTATACATCGGTGGCTCAGACTCTTCCAGTGAAAAATCATTTCAGGGATGGGAATCTGTTGCTGGGCTTAAAGATGTCATCCAGTGTATGAAGGAAGTTGTTATTTTACCTCTACTATATCCCGAGTTCTTTGATAGTTTAGGGCTTACACCTCCAAGAGGTGTTCTGTTGCATGGGTACCCTGGAACTGGGAAAACCCTAGTGGTCCGGGCATTGATAGGTGCATGTGCTTCTGGTGATAAACGGATTGCATATTTTGCCCGTAAAGGTGCAGATTGCTTGGGGAAATATGTAGGTGATGCTGAGCGTCAACTAAGACTATTATTTCAGGTTGCTGAGAGATGCCAGCCTTCTATAATATTCTTTGATGAGATAGATGGACTGGCACCTGTCCGCACTAGGCAGCAAGATCAGACACATAGTTCTGTTGTGTCTACCTTACTTGCTCTTTTAGATGGTTTAAAATCCAGGGGTTCAGTTGTAGTCATAGGTGCAACAAATCGTCCTGATGCTGTTGATCCAGCACTTAGGCGCCCTGGAAGATTTGATCGGGAAATTTATTTTCCATTGCCATCAATAAAGGACAGAGCTGCTATTCTATCACTTCACACCAAGAGGTGGCCGAAACCAATTACTGGATCCTTGCTTGAGTGGATTGCAAGAAAAACTCCTGGCTTTGCTGGTGCTGATCTCCAGGCTCTATGTACTCAAGCGGCAATAAATGCTTTGAAGAGGAATTTTCCTTTGCAAGAAGTGCTGTCTGCAGCTCAAGAGAAAGATTCTGGTTGCAAGAACCCTTCTCTTCCGTCCTTTGCGGTGGAGGAGAGGGATTGGTTGGAGGCTTTATCATGTTCCCCACCACCATGCTCCCGGAGAGAAGCTGGAAATGCTGCTAATGATGTAATATGCTCCCCTCTTCCTGTCCACCTTATTCCATGTTTGTTGCGTCCATTATGCACTCTTCTCCTATCTCTTTTTCTTGATGAACGCCTATGGTTGCCACCTCCTATATCCAGAGCTGTAACAATGATTAAAAATGTGATGATTTCTGCTTTAGACAAAAAGAAAATTCCTATTGATCATTGGTGGTTGCATGTTGATAAGTTTCTTCAAGAAGCAAATATTGCTGCGGAGCTAGAGAGGAAGCTTACTTGTTCTGGCATTTTGTCTGGGAATGATGGTTTTGCTGATTCTCTTGATGTTGTGGATGATACTGATGACAACAGGGTGAATTTTGCACCCTCTATAAAGAACCATGTTGGCATGCGCAGTGGTTTGTCATTTGCATTGCCTAACAAATCAGGATTTCGTATATTGATTACGGGAAATCCCAGATCTGGCCATAGACATCTTGCATCTTGCTTTCTTTCCTGCTTTATTGGGAATATTGAAATTCAGAAGATTGATATGGCAACTATTTGTCAAGAAGGACATGGAGATGTAGTACAAGGGATCGCCCAAATATTAATGAAATGTGCTTGTGTGCAATCATCTGTAGTATTCATGCCGAGAATAGATTTGTGGGCTGTAGAGACACATTTCCAAATTTCTAAAACCACTGACTCCTGCACAACAAATCATCTATCTCCCGAGATGGAGAAGTCTTGTTTCAAACCAAGCCAAGTTGCTGAGAAGGAAACCGTGTTCAATGCAGAGGAAAACAAGTCAGCAGAAGCCGAAAGCCAAGCCAGCAGAAGGGCTTCACAGGCCTGGATGTCATTCATTGAGCAGGTGGAGTCCATTGGTGTATCCTCATCATTGATGATTCTGGCTACCTCAGAAGTTCCTTATACTGAACTTCCATGTAAAATAAGGGAATTCTTCAAGACTTACCCATCAAAATGTGACGAATCAACTCCTTTGGAGCAGACAGTTCCTCATTTCTCCCTGCATATTGATGGGAAATTTGATCAGGAGGTGGTGATCAATCAATCTGCAGTAGAGCTATTAAGAAATTTAGTTGAGCAGCAGATTCAATTGATTCATCAGAGATCTCACATTCATATGAGTGCCCAAAGGAGGTACAGAACCAATGGTTCAATTGAAGCTTGCAAAGATACGGTACTTCAGAGAAACAATAATGGATCAGCCAATGAGAAGAAAGGTAAAATTCAACTTCCTGAATCTTTTACGAAAGTTCCAGGACCACCCAACAGTAAGTCACTGAAGGGAAAGTCAACCCTGCAGTTGGCAATATCCACATTTGGCTATCAAATTCTTCGATACCCACATTTTGCTGAACTTTGTTGGGTCACATCAAAACTCAAAGAGGGTCCTTGTGCTGATGTAAGTGGACCTTGGAAGGGCTGGCCTTTCAATTCCTGTATAATTCGTCCTAGTAATTCACAAGACAAGGTTTCTAGTACCTCTAGTGGCATAAAAAGCAAAGAAAGATCTGGTTTAGTTAGAGGCTTAGTTGCTGTTGGTTTATCAGCTTATAGAGGTGCTTACACATCTGTTAGGGGAGTTTCCCTTGAGGTACGGAATGTTCTTGAGATCTTGGTTGGGCAAGTCAATACAAAAATTCAAGCTGGGAAGGACAGATATCAATATCTTCGTATTTTATCGCAAGTTGCTTATCTGGAAGATATGGTCAATAACTGGGCTTATGCATTGCTGAGTCTAGAACAGGATTCCCCAGAGCTTGTGACAAAGGTTAAGCCGGGAAGTGTAGGGTCATTGAACAGCCATCTAACATGTGAGGTTCACCAAGCTGAAGGTGTGGATTGCCATTTGGCTGTTCCTATGAACAGTGGTGGTTTGGGTACACAGGAGAGGAATTGTGAGGGAATTCCTGCTGAAACAACTGGATGTCTTGACTTGAATGACAGAAATGATGATTTAAATAACCTTCACCACGATGGTAGCAATGCAAGTTCTAAAGGATCTCTTCAAAACCATTCCTTTTCAGATAAGCATATTAACAACTCTTCTGCTGTAAACCCACCTGTTGATCCATCCATAGATCAGGAAAATGGGACATCATCTTTAACTTCTGAAAATTTTGCAGTGGTGAGTGGAGAACTTGGGTCTGTGAAAGACTTGAATGAATCTGCACTCACTCCCTCTGCTCCCCTTTGTGAAAATGGAGAATGTGGATTTTCAAAAGACTTGAATAAATCTACACTCACTGACTTTGTTATCCTTTCTGAAAATGGACTTGATAGTGCCTGTGAACCAGAGGGTGTTAAGATTGGTGACTCCAGGACAGTCTCTAATCCGTCCCTCAGCTTGTCCTCAGTAGAGACTGGTGTTAAACTTAGTGATGATAACCCTGGCAAAGATGAGATTCATAATAATGCTTTAGACTCTAATGTCCCTTCAAGCAAGGATAGTGCCTGTGAACCAGAGGGTGTTAAGGTTGGTGACTCCAGGACAGTCTCTAATCCGTCTCTCAGCTTGTCCTCAGTAGAGACTGGTGTTAAACTTCGTGATAATAACCCTGGTAAAGATGAGAATGCTTTAGACACTAATGTCCCTTCAAGCAAGGACAGTGGTCCTACCGAATCTGAGGTTATTTGTTTGTATCAATGTTGCCCTCAATGTCTACACATTCTCTATAATTTGACCAAGAAATTACTTGTTCATGAATGTGGGTTGAATAATAACCATTGGACAGTGGAAGATGTCCATGATGCTGTGGTATCACTATCTGTGGATCTTATTTCAGCACTCAGAAAATTTTATCTGGCCGAAGATTTCACTGATTTATCTGATAAAACCTTGAGGCATGAAACGCATGGAGCATCTCTTGATTGTTCAAACCTGAGGACATGTAATCCCAGAAACGCAGGAGTGCCAGCTGAATGTATTTCTCACACAAGCAGCCTTCATACAGCTGCAAGCAAAGATATGGCACTGAATGAACCACTGAAGCTTCATTTTAAATTTGTTTTCAGAGATGGTGTACTTATTCATATGGACCCAGATGAGGATGTGTCTCTTCACTGTAAATTTGAGACCTTTTGCCTCTGTTCTGTTATAGAGTTGATAGTAATGACAAAGCGCCCTTGTGATTGA 5751 0.4316 MRLSRESGSSLEQKKAGRSGLRLRKKHKRLDAICEEEYNRNHGELNEGTSVGDDDGGDAGVRRSSRVRRAPVLLDASPTPSKKRRRLSKNGMLKDVKDAKNVERLTESSGGAEASRVWSSRLRSRVGSVGSKVKEEKEPRGGKRKLFEDDVRSRVDEEVEVREVDNKEELEGGMPTIVKSKRPGRIKATKREEGHGDKENEVHENLDETKSQEVELTLNKDEESASVLEETQLSGGSGNQIEVLDENAPITTGNQEGDLSNHVQIEECNGSIELSTVELVDKQDDILETAKEGKTASDVAEAAEILTEHRENEESVDKEVDIDEKTSQDANAVGMNESKQASNDKPRHQRIKEGRRCGLCGGGTDGKPPKRLVQDNGESENEAYSGSSASEEPNYDIWDGFGNEPGWLGRLLGPIDDRYGIARIWVHQHCAVWSPEVYFAGLGCLKNVRAALCRGRALKCTRCGRRGATIGCRVDRCPKTYHLACARANGCIFDHRKFLIACTDHRHLFQPHGNKYLDRIKKLKARKMKLEVRKLSNDAWRKDIEAEERWLENCGEDEEFLKRENKRLHRDLLRIAPVYIGGSDSSSEKSFQGWESVAGLKDVIQCMKEVVILPLLYPEFFDSLGLTPPRGVLLHGYPGTGKTLVVRALIGACASGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAERCQPSIIFFDEIDGLAPVRTRQQDQTHSSVVSTLLALLDGLKSRGSVVVIGATNRPDAVDPALRRPGRFDREIYFPLPSIKDRAAILSLHTKRWPKPITGSLLEWIARKTPGFAGADLQALCTQAAINALKRNFPLQEVLSAAQEKDSGCKNPSLPSFAVEERDWLEALSCSPPPCSRREAGNAANDVICSPLPVHLIPCLLRPLCTLLLSLFLDERLWLPPPISRAVTMIKNVMISALDKKKIPIDHWWLHVDKFLQEANIAAELERKLTCSGILSGNDGFADSLDVVDDTDDNRVNFAPSIKNHVGMRSGLSFALPNKSGFRILITGNPRSGHRHLASCFLSCFIGNIEIQKIDMATICQEGHGDVVQGIAQILMKCACVQSSVVFMPRIDLWAVETHFQISKTTDSCTTNHLSPEMEKSCFKPSQVAEKETVFNAEENKSAEAESQASRRASQAWMSFIEQVESIGVSSSLMILATSEVPYTELPCKIREFFKTYPSKCDESTPLEQTVPHFSLHIDGKFDQEVVINQSAVELLRNLVEQQIQLIHQRSHIHMSAQRRYRTNGSIEACKDTVLQRNNNGSANEKKGKIQLPESFTKVPGPPNSKSLKGKSTLQLAISTFGYQILRYPHFAELCWVTSKLKEGPCADVSGPWKGWPFNSCIIRPSNSQDKVSSTSSGIKSKERSGLVRGLVAVGLSAYRGAYTSVRGVSLEVRNVLEILVGQVNTKIQAGKDRYQYLRILSQVAYLEDMVNNWAYALLSLEQDSPELVTKVKPGSVGSLNSHLTCEVHQAEGVDCHLAVPMNSGGLGTQERNCEGIPAETTGCLDLNDRNDDLNNLHHDGSNASSKGSLQNHSFSDKHINNSSAVNPPVDPSIDQENGTSSLTSENFAVVSGELGSVKDLNESALTPSAPLCENGECGFSKDLNKSTLTDFVILSENGLDSACEPEGVKIGDSRTVSNPSLSLSSVETGVKLSDDNPGKDEIHNNALDSNVPSSKDSACEPEGVKVGDSRTVSNPSLSLSSVETGVKLRDNNPGKDENALDTNVPSSKDSGPTESEVICLYQCCPQCLHILYNLTKKLLVHECGLNNNHWTVEDVHDAVVSLSVDLISALRKFYLAEDFTDLSDKTLRHETHGASLDCSNLRTCNPRNAGVPAECISHTSSLHTAASKDMALNEPLKLHFKFVFRDGVLIHMDPDEDVSLHCKFETFCLCSVIELIVMTKRPCD. 1917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09581 1916 PANTHER AAA DOMAIN-CONTAINING 15 1817 IPR045199 -
Seca4g09581 1916 Pfam ATPase family associated with various cellular activities (AAA) 632 767 IPR003959 GO:0005524|GO:0016887
Seca4g09581 1916 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 404 508 IPR013083 -
Seca4g09581 1916 Gene3D - 768 860 - -
Seca4g09581 1916 MobiDBLite consensus disorder prediction 306 326 - -
Seca4g09581 1916 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 825 IPR027417 -
Seca4g09581 1916 MobiDBLite consensus disorder prediction 1729 1743 - -
Seca4g09581 1916 Pfam AAA+ lid domain 793 825 IPR041569 -
Seca4g09581 1916 MobiDBLite consensus disorder prediction 186 211 - -
Seca4g09581 1916 Gene3D - 593 868 IPR027417 -
Seca4g09581 1916 MobiDBLite consensus disorder prediction 1526 1573 - -
Seca4g09581 1916 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 768 860 - -
Seca4g09581 1916 FunFam ATPase family, AAA domain-containing 2 591 774 - -
Seca4g09581 1916 SMART AAA_5 628 769 IPR003593 GO:0016887
Seca4g09581 1916 MobiDBLite consensus disorder prediction 306 391 - -
Seca4g09581 1916 MobiDBLite consensus disorder prediction 1701 1719 - -
Seca4g09581 1916 MobiDBLite consensus disorder prediction 128 175 - -
Seca4g09581 1916 MobiDBLite consensus disorder prediction 1645 1663 - -
Seca4g09581 1916 Pfam PHD-like zinc-binding domain 427 506 - -
Seca4g09581 1916 MobiDBLite consensus disorder prediction 39 211 - -
Seca4g09581 1916 MobiDBLite consensus disorder prediction 341 355 - -
Seca4g09581 1916 MobiDBLite consensus disorder prediction 1 26 - -
Seca4g09581 1916 MobiDBLite consensus disorder prediction 1642 1743 - -
Seca4g09581 1916 ProSiteProfiles Extended PHD (ePHD) domain profile. 386 506 IPR034732 -
Seca4g09581 1916 FunFam P-loop containing nucleoside triphosphate hydrolases superfamily protein 352 508 - -
Seca4g09581 1916 ProSitePatterns AAA-protein family signature. 737 755 IPR003960 GO:0005524|GO:0016887
Seca4g09581 1916 MobiDBLite consensus disorder prediction 1529 1573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09581 Seca-Chr4 226043367 226054766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09581 594 829 Calmodulin-binding Proteins AT3G56690 41.597 2.43e-46 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09581 - - lja:Lj3g3v0428950.2 2663.64