Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09579 ATGATGTTCTCCTTCAAGACCCAAGAGCACCGAGCAAAACACAACAAGAAGAGGCTAACTGAAGACCAAGTGGCCATCCTAGAGAATTGCTTTGCCTCTAACAAGAAGCTTGAACCAAAGCAGAAGTTCCAGCTGGCAAACCAACTTGGTGTCCCTCCAAGACAGATTGCCATTTGGTACCAAAACAAACGAGCTCGCTGGAAGACACAGACCCTTGAGCATGACTACAATGCTCTTCAATCAAGGCTAGAGAATGTGATAGCTGAAAAGAAGCAACTAGAGAGAGATGTGGAATGCCTCAAGGTAGAGCTGAAGAAGGCTCAAGAGATGATGCTTATAAGCATGAAAGGCAATGCTTCTTCTTGTGAATTTTCAACATCTTTTGAAGAGGGAGGAGGGATGCATGATGATGAGGAGCTTTATGCTTACTTCATGGGTGCAAACGGGTCCAGTAATTTGCACTGA 465 0.4473 MMFSFKTQEHRAKHNKKRLTEDQVAILENCFASNKKLEPKQKFQLANQLGVPPRQIAIWYQNKRARWKTQTLEHDYNALQSRLENVIAEKKQLERDVECLKVELKKAQEMMLISMKGNASSCEFSTSFEEGGGMHDDEELYAYFMGANGSSNLH. 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09579 154 ProSitePatterns 'Homeobox' domain signature. 45 68 IPR017970 GO:0000981|GO:0006355
Seca4g09579 154 Coils Coil 69 110 - -
Seca4g09579 154 ProSiteProfiles 'Homeobox' domain profile. 10 70 IPR001356 GO:0003677
Seca4g09579 154 Pfam Homeodomain 15 68 IPR001356 GO:0003677
Seca4g09579 154 SUPERFAMILY Homeodomain-like 12 80 IPR009057 -
Seca4g09579 154 CDD homeodomain 13 70 IPR001356 GO:0003677
Seca4g09579 154 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 11 121 IPR045224 GO:0003700
Seca4g09579 154 FunFam Homeobox-leucine zipper protein ATHB-52 6 72 - -
Seca4g09579 154 SMART HOX_1 12 74 IPR001356 GO:0003677
Seca4g09579 154 Gene3D - 9 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09579 Seca-Chr4 226005684 226006148 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09579 9 152 Homeobox Transcription Factor Family AT5G53980 45.333 2.70e-35 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca4g09579 Homeodomain 9.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09579 - - ccaj:109788811 212.616