Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09574 ATGGATAACTATTACCACCACCACCACTTAAATAATAATAATAATAATAGTAGTAGTAGTGATATAAACCTACCACCTGGGTTTCGTTTCCATCCCACTGATGAGGAACTTATCACATACTACCTCCTCAAGAAGGTTCTAGACAACACCTTCTCAGCTGGCAGAGCTATAGTTGAAGTGGACCTTAACAAGTGCGAGCCATGGGAACTTCCTGAGAAAGCAAAGATGGGTGAAAAAGAGTGGTACTTCTTTAGCCTACGTGACCGAAAGTACCCAACTGGATTACGTACTAATAGGGCCACAGAAGCTGGTTATTGGAAAGCCACTGGCAAAGACAGAGAGATTTATAGCTCCAAAACTTGCTCCCTTGTAGGCATGAAGAAAACCTTAGTTTTCTATAGAGGCAGAGCTCCCAAAGGAGAAAAGAGCAACTGGGTCATGCATGAATATCGCCTTGATGGCAAATTTGCTTATCATTACCTCTCTAGAAGCTCCAAGGATGAGTGGGTCATATCACGTGTGTTTCAAAAGAACAACACAAGTGGTGGTGGCTCCACCGTGTCAGCCACCACCACCGCTTCTAAAAAGACAATGAGAACCAGTACTTCATCTACTACCATGAGTCTCTGCCCTGAACCAGGCTCACCTTCTTCCATTTACCTTCCACCGCTTCTAGAATCTTCTCCCTACACTCCAACCACCGCCACCTCCTCCGCCGCCGCATTTAACGACCGTGAGAGCTGCTCCTTTGACAGCGCCACCGTTCAAAGGGAGCACGTGTCCTGTTTCTCCACAATCTCCGCCGTTGCCGCTGATAACTTCGCCAACGCCGGCTTTGACTTTGCTCCGCCGCAGCAGCAGCCACCTCAGCTCGCCGTGGACCCTTTCTCTCGGTTCCAGAGGAATGTTGTTGGTGTCTCTGCTTTCCCTAGCCTGAGATCGTTGCAAGAGAATCTTCAATTGCCGTTCTTTTTCTCACCGGCGGCGGCGCAGCCCGTGCATGGTGACGTGGCAGGTTGGCCGGTGCCGGAGGAGCATAGGGTGGCTGATGGTGGTTCCGGTATGGCATTGGGAGCTTCCGAGCTTGATTGCTTGTGGGGCTTTTGA 1107 0.4968 MDNYYHHHHLNNNNNNSSSSDINLPPGFRFHPTDEELITYYLLKKVLDNTFSAGRAIVEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLDGKFAYHYLSRSSKDEWVISRVFQKNNTSGGGSTVSATTTASKKTMRTSTSSTTMSLCPEPGSPSSIYLPPLLESSPYTPTTATSSAAAFNDRESCSFDSATVQREHVSCFSTISAVAADNFANAGFDFAPPQQQPPQLAVDPFSRFQRNVVGVSAFPSLRSLQENLQLPFFFSPAAAQPVHGDVAGWPVPEEHRVADGGSGMALGASELDCLWGF. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09574 368 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 23 238 - -
Seca4g09574 368 ProSiteProfiles NAC domain profile. 24 177 IPR003441 GO:0003677|GO:0006355
Seca4g09574 368 Gene3D NAC domain 33 181 IPR036093 GO:0003677|GO:0006355
Seca4g09574 368 FunFam NAC domain-containing protein 100-like 33 181 - -
Seca4g09574 368 Pfam No apical meristem (NAM) protein 25 152 IPR003441 GO:0003677|GO:0006355
Seca4g09574 368 MobiDBLite consensus disorder prediction 180 213 - -
Seca4g09574 368 SUPERFAMILY NAC domain 18 177 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09574 Seca-Chr4 225751583 225753912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09574 4 368 NAC Transcription Factor Family AT5G53950 51.151 4.28e-115 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca4g09574 NAM 1.9e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09574 - - gmx:100788671 488.804