Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09568 ATGGCTCCGAGGGATAGACCCACCACCGTTCTCACCAACCTTGCCAAAGAGATCCGATACAGAGGAGTCAGGAAGAGACCGTGGGGCCGTTACGCCGCCGAGATCCGCGACCCTGGGAAAAAAACTCGCGTCTGGCTAGGCACATTCGACACCGCCGAGGAGGCTGGGCGTGCGTACGATGCAGCGGCGCGTCAGTTTCGTGGTGCGAAGGCGAAGACCAATTTTCCCACACCGTCGGAGCTCACGAACAACTCCGCGCGCAGTCCTAGCCAGAGCAGCACCCTAGAGTCCTCTTCTCCGCCGCCTCTGGACCTCACTCTCACCCCGCTCTCCTCTGCCACCGCCGGCGCGGTGGTATTCCCGGCGGTTCGCCCGCTGATGTTCTTCGACGCATTCGCTCCGGCTGACAGGAGCCGTCCGGTGGTCAGTTTCCACCGCGCCGCCGGAGCACAGAGCGACTCTGATTCGTCCTCCGTCGTAGACTACGAACGGGTCCCACATCGAAGACTTTTGGATCTTGACCTTAACGTCCCTCCTCCGCCGGAGGTTGCCTGA 555 0.6234 MAPRDRPTTVLTNLAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAGRAYDAAARQFRGAKAKTNFPTPSELTNNSARSPSQSSTLESSSPPPLDLTLTPLSSATAGAVVFPAVRPLMFFDAFAPADRSRPVVSFHRAAGAQSDSDSSSVVDYERVPHRRLLDLDLNVPPPPEVA. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09568 184 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Seca4g09568 184 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Seca4g09568 184 FunFam Ethylene-responsive transcription factor 2 19 77 - -
Seca4g09568 184 Pfam AP2 domain 19 68 IPR001471 GO:0003700|GO:0006355
Seca4g09568 184 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 161 - -
Seca4g09568 184 MobiDBLite consensus disorder prediction 70 103 - -
Seca4g09568 184 CDD AP2 19 76 IPR001471 GO:0003700|GO:0006355
Seca4g09568 184 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Seca4g09568 184 SUPERFAMILY DNA-binding domain 19 77 IPR016177 GO:0003677
Seca4g09568 184 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Seca4g09568 184 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Seca4g09568 184 MobiDBLite consensus disorder prediction 75 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09568 Seca-Chr4 225697846 225698400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09568 8 169 AP2-EREBP Transcription Factor Family AT3G15210 54.922 1.30e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g09568 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09568 K09286 - gmx:100786709 193.741