Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09555 ATGGCTGATATAGCAGGTCTGGCTGAGGCTGCAGGGTCAAGATTTAGTTCATTGGAGCTCATTGGACAGGGATCATTTGGCGACGTCTATAAAGGGTTTGACAAGGAGCTCAACAAAGAAGTTGCTATCAAAGTCATTGATTTGGAAGAGTCAGAGGATGAGATTGAGGACATTCAGAAGGAAATTTCTGTTCTGTCACAATGTCGATCTCCGTACATTACTGAGTATTATGGTTCATTTCTCAATCAAACTAAACTTTGGATAATAATGGAGTTCATGGCTGGAGGCTCTGTTGCTGATCTACTCCAATCCGGACCTCCACTTGATGAAATGTCAATTGCTTGCATTCTACGTGACCTGCTTCATGCGATTGATTACCTACATAGTGAAGGAAAAATTCATAGAGACATAAAAGCTGCAAACATTTTATTGACTGAGAATGGTGATGTAAAGGTTGCAGATTTTGGTGTTTCTGCACAGCTAACAAGGACCATATCAAGGAGAAAGACGTTTGTGGGCACACCATTCTGGATGGCACCTGAGGTTATTCAAAATTCTGAAGGATATAATGAGAAGGCAGATATCTGGTCTCTGGGGATTACTGCAATTGAGATGGCAAAGGGGGAGCCTCCACTTGCTGATCTTCATCCTATGAGAGTGCTTTTCATCATACCCCGAGAGAATCCACCGCAGCTAGATGAGCATTTTTCTCGTCCCATGAAAGAATTTGTTTCATTGTGTTTGAAGAAGGTTCCTGCAGAGAGGCCAAGTGCTAAGGAACTTCTCAAACACCGTTTCATTCGGAATGCTAGGAAGAGTCCAAAGCTTTTGGAGAGAATAAGGGAGCGTCCAAAGTACCAAATGAAGGAAGATCACACGGCAGCTAGAAATGGTCCAAGAGGGATAGGGGAGGCATCTGATACTATGAAGGTAGCAAGGGATTTAAGAGGTGAAGAAACTAATCAGCCTAGTGACCAGGGTAAAACTCTGAAAAGTTCTGGGTGGGACTTCAGCATTGGTGGATCACAGGGTACTGGAACATTTCGTAGTGTTTCACGGCCACCTCAATTTAGAGATAAGAAAACTGAAGTTTCAAATCATCAGCTCAACCAAAGAAAAATTCCGGAGAGTGGCTATCAAGGGGGATCTGCCAATAGGAGTGTACTTAATGAGTTGCTAGAAACTTCTTCCGGAAAAGATCTTGGAGTTCCCTATCATGATGAGCATCCAGACAATCACCTTGAAGATTGA 1251 0.4293 MADIAGLAEAAGSRFSSLELIGQGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSFLNQTKLWIIMEFMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHSEGKIHRDIKAANILLTENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKEFVSLCLKKVPAERPSAKELLKHRFIRNARKSPKLLERIRERPKYQMKEDHTAARNGPRGIGEASDTMKVARDLRGEETNQPSDQGKTLKSSGWDFSIGGSQGTGTFRSVSRPPQFRDKKTEVSNHQLNQRKIPESGYQGGSANRSVLNELLETSSGKDLGVPYHDEHPDNHLED. 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09555 416 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09555 416 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 11 352 - -
Seca4g09555 416 MobiDBLite consensus disorder prediction 401 416 - -
Seca4g09555 416 MobiDBLite consensus disorder prediction 281 297 - -
Seca4g09555 416 Gene3D Transferase(Phosphotransferase) domain 1 12 301 - -
Seca4g09555 416 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09555 416 MobiDBLite consensus disorder prediction 368 394 - -
Seca4g09555 416 MobiDBLite consensus disorder prediction 281 305 - -
Seca4g09555 416 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09555 416 SUPERFAMILY Protein kinase-like (PK-like) 12 292 IPR011009 -
Seca4g09555 416 MobiDBLite consensus disorder prediction 317 416 - -
Seca4g09555 416 MobiDBLite consensus disorder prediction 322 352 - -
Seca4g09555 416 Coils Coil 41 68 - -
Seca4g09555 416 FunFam serine/threonine-protein kinase dst1 isoform X1 12 300 - -
Seca4g09555 416 CDD STKc_MST3_like 13 287 - -
Seca4g09555 416 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09555 Seca-Chr4 225482801 225491838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09555 1 416 MAP Kinase Kinase Kinase Kinase AT3G15220 74.820 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Seca4g09555 Pkinase 3.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09555 K08838 - gmx:100786501 784.252