Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09552 ATGACTGGCAAAGAAATTTTCCATAAGATGAAGGAAAAAGTTTTGGGCTCATCTGATCCTGATTCAGGGAAAGGAAAGAGCAAGATGTCGAAGCATATAACTCATGGCTTTCACTTGGTGAAGGGAAGATCAGATCATGAAATGGAAGACTATCATGTTGCTCAATTTAAGCAAATTGATAACAATGAATTGGGTTTATTTGCAATATTTGATGGCCACTCAGGTCACAGTGTACCTGATTACTTACGGTCTCATTTGTTTGATAATATCATAAAAGAGCCTGACTTCTGGACAGACCCTGCAGAAGCAATCAAGAGAGCATATAATGTAACTGATTCTACTATTTTAGAGAAATCAGGTGAATTGGGTAGAGGGGGTTCAACTGCAGTTACAGCAATATTGATCAATTGTCAGAAGCTAGTAGTGGCCAATATTGGTGATTCTCGGGCTGTCTTATGCAAGAATGGAGTGGCCAAACAACTATCAGTGGATCATGAACCAAACACAGAAAGTGAGGATATAAAAAACAGAGGTGGCTTTGTATCAAACTTCCCAGGTGACGTTCCACGGGTTGATGGACAGTTGGCAGTGTCAAGGGCATTTGGTGACAAAAGCCTAAAGAAACATTTGAGCTCAGAACCATATGTGACAGTGGAGATAATAGATGATGATGCAGAGTTTGTTATATTAGCCAGTGATGGGTTATGGAAGGTAATGTCAAATCAAGAAGCAGTTGATGCCATCAGAAATATAAAGGATACTCGTTCTGCAGCAAAGTACCTTACTGAAGAAGCACGGAACAGGAAAAGCTCAGATGATATCTCTTGCGTTGTCGTCAGATTTCAGTGA 849 0.4005 MTGKEIFHKMKEKVLGSSDPDSGKGKSKMSKHITHGFHLVKGRSDHEMEDYHVAQFKQIDNNELGLFAIFDGHSGHSVPDYLRSHLFDNIIKEPDFWTDPAEAIKRAYNVTDSTILEKSGELGRGGSTAVTAILINCQKLVVANIGDSRAVLCKNGVAKQLSVDHEPNTESEDIKNRGGFVSNFPGDVPRVDGQLAVSRAFGDKSLKKHLSSEPYVTVEIIDDDAEFVILASDGLWKVMSNQEAVDAIRNIKDTRSAAKYLTEEARNRKSSDDISCVVVRFQ. 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09552 282 FunFam Probable protein phosphatase 2C 39 24 282 - -
Seca4g09552 282 CDD PP2Cc 35 281 IPR001932 -
Seca4g09552 282 ProSiteProfiles PPM-type phosphatase domain profile. 34 281 IPR001932 -
Seca4g09552 282 Gene3D - 16 282 IPR036457 -
Seca4g09552 282 Pfam Protein phosphatase 2C 44 274 IPR001932 -
Seca4g09552 282 SUPERFAMILY PP2C-like 30 281 IPR036457 -
Seca4g09552 282 SMART PP2C_4 29 279 IPR001932 -
Seca4g09552 282 PANTHER PROTEIN PHOSPHATASE 27 281 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09552 Seca-Chr4 225371461 225375583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09552 1 282 PP2C-type Phosphatase Gene Family AT3G15260 76.471 4.37e-166 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09552 K17506 - gmx:100787942 504.212