Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09551 ATGGAGGCCAGGAGTATTGAGAGGAAGAGAACATTGATGATGGAGAAGGTGAGAAAGAATAGTACAGTTGAAGAAGAAGTGGAAAATGAAGTAGAAGAGGAAGATGAAAGTGGTGGTGTGGATGTTAGTATAACAGAAGAAGAGAAGAAGAAAGGGGTGGTAGGTGGTGGGAGAAGAGGATCAAGTGGTGGTGGAGGTGTTTCTCCACCTTCCTGCCAAGCTGAGAGGTGTGGAGCTGATTTGACTGATGCAAAGAGATACCATCGCCGCCATAAGGTCTGTGAGTTCCATTCCAAGGCACCTGTTGTGGTGGTTGCAGGGCAGAGACAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGATCTGGCTGAGTTTGATGAAGCTAAAAGAAGCTGCCGCAGGCGCTTGGCCGGACACAATGAACGGCGCCGGAAAAGCAACCCGGAAGCTGCCAATGAAGGGTCCAGCCATGGAAAAGGCCATCATCATCCTAAGGAAACACAGTGCAGACTTGCTGATGAGAGGGGAAGAATTCAGATGAACCTGCCAGGGAGTTCTGGCTATAAGTCTTTCAATATCAGGTGA 585 0.4889 MEARSIERKRTLMMEKVRKNSTVEEEVENEVEEEDESGGVDVSITEEEKKKGVVGGGRRGSSGGGGVSPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGQRQRFCQQCSRFHDLAEFDEAKRSCRRRLAGHNERRRKSNPEAANEGSSHGKGHHHPKETQCRLADERGRIQMNLPGSSGYKSFNIR. 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09551 194 Gene3D - 63 133 IPR036893 GO:0003677|GO:0005634
Seca4g09551 194 MobiDBLite consensus disorder prediction 136 194 - -
Seca4g09551 194 MobiDBLite consensus disorder prediction 142 173 - -
Seca4g09551 194 MobiDBLite consensus disorder prediction 26 41 - -
Seca4g09551 194 ProSiteProfiles Zinc finger SBP-type profile. 69 146 IPR004333 GO:0003677
Seca4g09551 194 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 54 157 IPR044817 GO:0003677
Seca4g09551 194 Pfam SBP domain 72 145 IPR004333 GO:0003677
Seca4g09551 194 MobiDBLite consensus disorder prediction 1 25 - -
Seca4g09551 194 MobiDBLite consensus disorder prediction 1 73 - -
Seca4g09551 194 FunFam Squamosa promoter-binding-like protein 14 64 133 - -
Seca4g09551 194 SUPERFAMILY SBT domain 70 150 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09551 Seca-Chr4 225366691 225367989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09551 1 194 SBP-box Gene Family AT3G15270 46.667 3.35e-40 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca4g09551 SBP 9.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09551 - - aprc:113864686 267.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09551 4 225366691 225367989 Seca6g04875 6 116142306 116144134 ECH
Seca4g09551 4 225366691 225367989 Seca4g09551 4 225366691 225367989 ECH