Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09550 ATGGTGCTGCAAAGACATCACTCTATGACTTTTGTGCAATGGGGTTTCTTGGCTTGCTTTATTTGCTTTTCTGTGGGACTTGAAACCCCAGCCCCATCCTGTGACAAGCGTGATTTGTTGGCCCTGAAGGAATTTGCTGGCAACCTTACAAATAGCATCACAGGGTGGTCAAATGATGTTGTCTGCTGCAAATGGGTTGGAGTTTTTTGTGATAATGTGAATGATGGTAATGGATCAGCTTCATGTAGAGTGACCAAGTTGATTCTCTCTGGAATGGGTCTCAATGGCACAATTTCGAACTCTTTAGCCCATCTAGATAAGCTAAATGTGCTGGATCTTTCGTCCAATCTTCTCCAAGGTGGATTGCCTTCTGAGTTCTCCAAGTTGAAACAGTTACACTTTCTTGACTTGAGTAATAATCTGCTGTCAGGACCAGTTGCTGGGGCAATTTCTGGTTTGCAATCCATTCAGATACTGAATCTTTCAAGCAATTTACTTGATGAAGACCTCTTCCAGTTTGGGGGATTCCGACATCTCGTTGCTCTCAACATAAGCAGCAATTCATTCACTGGTCAGGTCAATCCTCAAATTTGCAGCTCTTCCAAAGGACTTCATGTTATTGATTTATCCATAAATCATTTTTCTGGTGGTCTTGAATGGTTAGACAGCTGTAGCACATCACTCCAACAGGTTCAATTGGATTCCAATTCATTTTCTGGCCCTCTTCCTGATTCCTTGTATTCAAGGTCAGCCTTGGAGCAACTCTCAATCTCTATGAACAAATTCTCTGGCCAGTTAAGCAAGCAATTGAGTAAGCTCTCTAACCTGAAGTTTTTAATAATGTATGGAAACCGGTTCTCAGGGGAACTCCCAAATGTATTTGGGAATCTTTTGCACCTACAACAATTTGTAGCACACTCCAATTCATTTTCTGGACCATTGCCTTCCACCTTGGCCTTATGCTCAAAACTTCAGGTGCTTAACCTTCAAAATAATTCTTTGGAAGGTTCTGTTGATCTTAATTTCACTGGCTTGTCTAATCTTTTCTCGTTGGACCTTGCTAGCAATCATTTAAATGGATCCCTTCCAACTTCCTTGTCCTATTGCCATGAATTGACTTTGTTAAGCCTTGCCAAGAACAAGTTAACTGGCCAAATCCCTGAGAACTATGCAAACCTCACTTCACTTGTGATTCTGTCCTTGTCAAATAACAGCTTAGAGAACTTACCTGGGGCGCTTTATGTACTGCGGCAGTGCAAAAAACTCACATTTCTCATCCTCTCAAAGAATTTCCATGGTGAGGAAATTCCAGAAAGTTTAACAGCAGGCTTTGAGAGCCTTATGGTTTTAGCACTTGGAAATTGTGGTCTTAAAGGCCATGTTCCTGCTTGGATATGGGATTGCACGAGTTTGGAAGTCCTTGATTTGTCATGGAACCGTTTGGAAGGTAGTATCCCATCTTGGATTGGTAGGATGGACAATTTGTTCTACTTGGATTTGTCAAATAATTCTCTCACAGGAGAAATACCAAAAGGTTTGACAGAGTTGGGGAGCCTCACATCCCCAAATAGAATATCAAGTCTGGCTGCTTCTTCTGCCATTCCTCTCTATATTAAGAGAAACAAGAGTGTTAATGGGCTGAAATATAGCCATGCCTCAAGTTTCCCTCCTTCAATATACTTGAGCAATAACCAATTAAGTGGAATAATATGGCCTGAAATTGGTCGTTTAAAAGCACTTCATATCTTAGATTTAAGCAAGAACAAGATCACTGGTACCATTCCCGACTCTATTTCAGAGATGGAGAATTTGGAAATATTAGATTTATCTCATAATGACCTCTTTGGAACAATCCCTCCATCATTTAACAACCTCACATTCTTGTCAAAGTTCAGTGTGGCATATAATCACTTGCATGGTCCAATTCCAACTGGGGGCCAATTTTTAAGCTTCCCTAATTCAAGTTTTGAGGGCAACCCGGGGCTTTGTGGGAAAATAGTAATAGATTCTCCTTGCAAAATTGTAAAAAATGTGAGCCTGGGGCCAAACATTGCTCCTTATTCTTCTAGAAAATTTGGTAAAAGCAATGTCCTGTGCATAACAATTAGTGTAGGTGTAGGCCTTGCACTGTTTCTTGCAATTGTTCTGCTAAGAATGTCAAAGAGGGATGGGGATAAGCCAATTGATAACCTTGATGAGGAGCACAGCTGGCCAAACAGGTTACCTGAAGCACCTGTTTCTTCAAAATTGGTACTTTTTCAGAATTCAGATTGCAAGGATCTCACAGTTGCAGATTTGTTTAAATCCACAAACAATTTCAACCAAGAAAATATAATTGGTTGTGGCGGGTTTGGTCTTGTCTACAAGGCGAATCTTCCAAATGGCGCAAAAGCAGCTATCAAGAAACTTTCAGGGTACTGTGGTCAAGTTGAACGTGAATTCCAAGCTGAAGTAGAGGCACTCTCAAGAGCTCAGCACAAGAACCTTGTCTCTCTCAAAGGTTATTGTCAGCATATCAATGACAGATTGTTAATTTACTCCTACTTGGAGAATGGAAGCCTTGATTATTGGCTGCATGAGAGTGTGGATGGAAATTCAGCTCTAAAATGGGATGTAAGACTCAAGATTGCCCAAGGTGCAGCTCATGGATTAGCTTACTTGCACACAGTGTGTGATCCACATATCGTGCATCGAGATATTAAATCTAGCAACATACTTCTGGATGATAAATTTGAAGCTTATTTGGCTGATTTTGGTCTCTCAAGGCTTCTTCAACCCTGTGATACTCATGTTACAACAGATTTAGTAGGAACTTTAGGATATATTCCTCCAGAATATAGTCAAGCACTGAAAGCAACATTCAAGGGTGATATTTATAGTTTTGGTGTTGTTCTTGTTGAGCTTCTTACTGGTAAAAGGCCTGTAGAAGTCATCATGGGGCAACGTTGTAGGAATCTGGTGTCTTGGGTGTTTCAGATGAAATCTGAGAATAGGGAGCAGGAAATTTTTGATTCAGCCATTTGGCACAAGGATAATGAGAAGCAGCTTTTGGAGGTACTTGCTATTGCTTGTAAATGTCTAGATGAAGATCCAAGGCAAAGACCCCATATTGAATTAGTTGTTTCATGGCTTGATGGTGTAGGATTTGATGGCTCTCAAGAATCAACTTAG 3171 0.4062 MVLQRHHSMTFVQWGFLACFICFSVGLETPAPSCDKRDLLALKEFAGNLTNSITGWSNDVVCCKWVGVFCDNVNDGNGSASCRVTKLILSGMGLNGTISNSLAHLDKLNVLDLSSNLLQGGLPSEFSKLKQLHFLDLSNNLLSGPVAGAISGLQSIQILNLSSNLLDEDLFQFGGFRHLVALNISSNSFTGQVNPQICSSSKGLHVIDLSINHFSGGLEWLDSCSTSLQQVQLDSNSFSGPLPDSLYSRSALEQLSISMNKFSGQLSKQLSKLSNLKFLIMYGNRFSGELPNVFGNLLHLQQFVAHSNSFSGPLPSTLALCSKLQVLNLQNNSLEGSVDLNFTGLSNLFSLDLASNHLNGSLPTSLSYCHELTLLSLAKNKLTGQIPENYANLTSLVILSLSNNSLENLPGALYVLRQCKKLTFLILSKNFHGEEIPESLTAGFESLMVLALGNCGLKGHVPAWIWDCTSLEVLDLSWNRLEGSIPSWIGRMDNLFYLDLSNNSLTGEIPKGLTELGSLTSPNRISSLAASSAIPLYIKRNKSVNGLKYSHASSFPPSIYLSNNQLSGIIWPEIGRLKALHILDLSKNKITGTIPDSISEMENLEILDLSHNDLFGTIPPSFNNLTFLSKFSVAYNHLHGPIPTGGQFLSFPNSSFEGNPGLCGKIVIDSPCKIVKNVSLGPNIAPYSSRKFGKSNVLCITISVGVGLALFLAIVLLRMSKRDGDKPIDNLDEEHSWPNRLPEAPVSSKLVLFQNSDCKDLTVADLFKSTNNFNQENIIGCGGFGLVYKANLPNGAKAAIKKLSGYCGQVEREFQAEVEALSRAQHKNLVSLKGYCQHINDRLLIYSYLENGSLDYWLHESVDGNSALKWDVRLKIAQGAAHGLAYLHTVCDPHIVHRDIKSSNILLDDKFEAYLADFGLSRLLQPCDTHVTTDLVGTLGYIPPEYSQALKATFKGDIYSFGVVLVELLTGKRPVEVIMGQRCRNLVSWVFQMKSENREQEIFDSAIWHKDNEKQLLEVLAIACKCLDEDPRQRPHIELVVSWLDGVGFDGSQEST. 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09550 1056 FunFam Leucine-rich repeat receptor-like protein kinase 849 1054 - -
Seca4g09550 1056 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 294 1045 - -
Seca4g09550 1056 FunFam Tyrosine-sulfated glycopeptide receptor 1 342 677 - -
Seca4g09550 1056 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 739 848 - -
Seca4g09550 1056 Pfam Leucine Rich Repeat 470 489 IPR001611 GO:0005515
Seca4g09550 1056 ProSitePatterns Protein kinases ATP-binding region signature. 779 802 IPR017441 GO:0005524
Seca4g09550 1056 SMART LRR_sd22_2 577 600 - -
Seca4g09550 1056 SMART LRR_sd22_2 345 371 - -
Seca4g09550 1056 SMART LRR_sd22_2 129 155 - -
Seca4g09550 1056 SMART LRR_sd22_2 393 411 - -
Seca4g09550 1056 SMART LRR_sd22_2 601 627 - -
Seca4g09550 1056 SMART LRR_sd22_2 492 515 - -
Seca4g09550 1056 SMART LRR_sd22_2 468 483 - -
Seca4g09550 1056 Pfam Leucine rich repeat 558 614 IPR001611 GO:0005515
Seca4g09550 1056 Pfam Leucine rich repeat 323 382 IPR001611 GO:0005515
Seca4g09550 1056 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 243 338 - -
Seca4g09550 1056 PRINTS Leucine-rich repeat signature 495 508 - -
Seca4g09550 1056 PRINTS Leucine-rich repeat signature 601 614 - -
Seca4g09550 1056 Gene3D Transferase(Phosphotransferase) domain 1 849 1049 - -
Seca4g09550 1056 SUPERFAMILY Protein kinase-like (PK-like) 754 1044 IPR011009 -
Seca4g09550 1056 SUPERFAMILY L domain-like 558 673 - -
Seca4g09550 1056 Pfam Protein kinase domain 774 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09550 1056 Gene3D Ribonuclease Inhibitor 368 678 IPR032675 -
Seca4g09550 1056 Gene3D Ribonuclease Inhibitor 266 367 IPR032675 -
Seca4g09550 1056 FunFam Leucine-rich repeat receptor-like kinase 37 154 - -
Seca4g09550 1056 Gene3D Phosphorylase Kinase; domain 1 739 848 - -
Seca4g09550 1056 SMART LRR_typ_2 105 128 IPR003591 -
Seca4g09550 1056 SMART LRR_typ_2 273 296 IPR003591 -
Seca4g09550 1056 SMART LRR_typ_2 393 416 IPR003591 -
Seca4g09550 1056 SMART LRR_typ_2 601 624 IPR003591 -
Seca4g09550 1056 SMART LRR_typ_2 492 516 IPR003591 -
Seca4g09550 1056 SMART LRR_typ_2 345 369 IPR003591 -
Seca4g09550 1056 SMART LRR_typ_2 129 152 IPR003591 -
Seca4g09550 1056 SMART LRR_typ_2 577 600 IPR003591 -
Seca4g09550 1056 Gene3D Ribonuclease Inhibitor 170 265 IPR032675 -
Seca4g09550 1056 SUPERFAMILY L domain-like 55 265 - -
Seca4g09550 1056 ProSiteProfiles Protein kinase domain profile. 773 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09550 1056 Pfam Leucine rich repeat N-terminal domain 36 71 IPR013210 -
Seca4g09550 1056 Gene3D Ribonuclease Inhibitor 34 154 IPR032675 -
Seca4g09550 1056 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Seca4g09550 1056 SMART serkin_6 773 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09550 1056 ProSitePatterns Serine/Threonine protein kinases active-site signature. 895 907 IPR008271 GO:0004672|GO:0006468
Seca4g09550 1056 SUPERFAMILY RNI-like 199 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09550 Seca-Chr4 225347385 225350555 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09550 40 363 Receptor kinase-like Gene Family AT1G55610 24.316 8.95e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Seca4g09550 Pkinase 3.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09550 - - gmx:100789534 1599.72