Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09542 ATGGGTGAGGACGATGAAATAATATCAGAAAATAATAGTCTTGCATGTATACAAAGTGAAGAACCTTATACCCCACATGATGTTGATACTTCATTAACAAAATGTGATATAGTTTTTGAACCACTAGAGGGAATGTCATTCAAATCTGTGGAGGAATTCAAAGACTTTTACAAAAAATATGCCTTTCAACAAGGGTTTGGTTTTGTGATAAGAACCTCAAGAAAGAACTCTTCTGACTGTGTTTGTAACCTTGTATTAGCATGTGCACGCCAAGGACACAACAAATCAACCATGAAGAACTGTTTCAAAAGTGTGTCATCAATCAAAGCTAAATGTGGAGCACATGTTACTGCTTGCTTGAAGTCTGATGGGTTGTATTACATAACCAAGGTCATTCTTCATCATTCTCATGATCTGAACCCAAGCAAAGCAAGATTGTTCAAGTCAAACAAAGAGATGAGCATGCATGTAAGGAGAGTCTTGGATGTCAATGATAGGGCAGGGGTGAGATTGAACAAAAGCTTTAATTCCATTGTTACAGATGTGGGGGGCTATGAAAATCTGCCTTGTATTGAGAGAGATGCGAGGAATTATATTATAAAGGAAAGGCGAGCAATTGGAAAAGGGGGTGATGGTAAGGCTCTCAAGCATTCTCTTGCTGTGCTTGGTATAGAAAGGGTGAAAGAAGTGCCTTCTAAGTATGTTTTATCAAGGTGGAGCAAGAACATGAAAAGAAGACACACATATATTAAGAGTAGTTATGATGTTAAGCAATTAAAGCCTCAAATAAAAAGATTTGATGATTTATGTAAGAACTTTTATGAAGTTGGTGAAGTTGCTGCAGAATATGAAGACACGACTAATTTTATACAAGAGTTGTTACATGAAGCAATGAGCAAATTGAAGGTTATGATTGCATCTAATAAACAGAATCAAATATGTATTGTTCGTCCTACTTGCAATATGAATGTAATTTGTGACACGCCAATGGTGAGTGAAACCATTCATAGTCCAAAGGTAGTACGTCGTGTAGGTCGCCCTGCTTCAAAAAGGGAGGTCTCAATACTTGAGAAAGTTATCAAAAGTTCGAAGAACAGAAGGAAGACGATGAAATCCAATCAAATGCAACAACAAATGGGTGTAAATGTTGGTGAGGAATGCCATGGTCAAATTGTCTCTACAGATGGTAGCCTTGTTTCGTTATTGTCAAGCTTCCAGGGAGTGGAGTTGGAGCTTTAA 1239 0.3745 MGEDDEIISENNSLACIQSEEPYTPHDVDTSLTKCDIVFEPLEGMSFKSVEEFKDFYKKYAFQQGFGFVIRTSRKNSSDCVCNLVLACARQGHNKSTMKNCFKSVSSIKAKCGAHVTACLKSDGLYYITKVILHHSHDLNPSKARLFKSNKEMSMHVRRVLDVNDRAGVRLNKSFNSIVTDVGGYENLPCIERDARNYIIKERRAIGKGGDGKALKHSLAVLGIERVKEVPSKYVLSRWSKNMKRRHTYIKSSYDVKQLKPQIKRFDDLCKNFYEVGEVAAEYEDTTNFIQELLHEAMSKLKVMIASNKQNQICIVRPTCNMNVICDTPMVSETIHSPKVVRRVGRPASKREVSILEKVIKSSKNRRKTMKSNQMQQQMGVNVGEECHGQIVSTDGSLVSLLSSFQGVELEL. 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09542 412 PANTHER OS01G0519700 PROTEIN 216 387 - -
Seca4g09542 412 Pfam FAR1 DNA-binding domain 55 141 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09542 Seca-Chr4 225261619 225265674 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g09542 FAR1 1.3e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09542 - - psat:127087122 191.045