Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09540 ATGGGGTTTCAGAGACCTCTCTGTCTCTTATTGATTCTCTCTACTCTTCTCTCAATCTCCCAAGCCAACAAATTCTACGTTGGTGGAAGCAACGGGTGGGTTCCAAATCCTTCAGAGAGTTACAACCAATGGGCTGGAAGGAACAGGTTCCAAGTCAACGACACTATAGTTTTCAAGTACAAGAAGGGTTCAGACTCGGTGTTGGAAGTGAAGAAGGAGGATTATGATAAGTGCAATAAGACAAACCCGATCAAGAAGTTTGAGGAGGGTGACACAGAGTTCAAGCTTGATCGATCAGGACCATTCTACTTCATCAGTGGAAAAGATGGAAACTGTGAAAAGGGTCAAAAGTTGATTGTTGTGGTCTTAACCCCACGGGGACAAACGCAAACACCACCATCACCCTCTGCCCCAACTCCAACATCACCACCAAAATCTTCACCTTCACCTTCACATTCACCACCACCCTCTATTCCAAGTCCCACATCGCCACCAAAATCTTCACCTTCACCTTCACCTTCACCATCCGCATCACCCGTTTCACCATCCCCAAAGCCAAATCCACCATCTGGGTCGCCGCCGGCGATGACACCGACCTCGCCGTCTCCCTCTGTTTCACCTTCTCCGGCGGGTGGACCTTCGGCCTCAACTCCGGCGCCGACAGCTACATCCCCATCTCCCTCTCCGGTGAGCACCCCTCCGGCGACATCTCCGGCACCGGCAGGTACATCACCATCTCCATCTCCGGTGAGCACCCCACCGGCCGGTGGACCTCCGGCACCCTCTCCGGGTACGTCTCCGGCGCCGGGGGCTTCACCACCGTCGCCGTCTCCTGGCTCTGGTTCTTCCACACCGCCTTCTGGTTCCCCGCCGCCACCTCTGGCAACAACTCCATCGTCGTCGACTGAGGCGCCGCCGTCTTCTAATACAACGTCGCCGCCACAGGGAAATAGTGGGTCATCTGTGACTCCTTCGAGCCTTTTGGTGTGTTCGGTTACAGTTATTGTTGGTGCTGTGTTGTTGCGTTTCAGCACGATTTTGGGCTGA 1047 0.5415 MGFQRPLCLLLILSTLLSISQANKFYVGGSNGWVPNPSESYNQWAGRNRFQVNDTIVFKYKKGSDSVLEVKKEDYDKCNKTNPIKKFEEGDTEFKLDRSGPFYFISGKDGNCEKGQKLIVVVLTPRGQTQTPPSPSAPTPTSPPKSSPSPSHSPPPSIPSPTSPPKSSPSPSPSPSASPVSPSPKPNPPSGSPPAMTPTSPSPSVSPSPAGGPSASTPAPTATSPSPSPVSTPPATSPAPAGTSPSPSPVSTPPAGGPPAPSPGTSPAPGASPPSPSPGSGSSTPPSGSPPPPLATTPSSSTEAPPSSNTTSPPQGNSGSSVTPSSLLVCSVTVIVGAVLLRFSTILG. 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09540 348 MobiDBLite consensus disorder prediction 220 299 - -
Seca4g09540 348 ProSiteProfiles Phytocyanin domain profile. 23 124 IPR003245 GO:0009055
Seca4g09540 348 Pfam Plastocyanin-like domain 33 116 IPR003245 GO:0009055
Seca4g09540 348 PRINTS Proline rich extensin signature 182 207 - -
Seca4g09540 348 PRINTS Proline rich extensin signature 123 144 - -
Seca4g09540 348 PRINTS Proline rich extensin signature 144 160 - -
Seca4g09540 348 PRINTS Proline rich extensin signature 161 178 - -
Seca4g09540 348 MobiDBLite consensus disorder prediction 300 323 - -
Seca4g09540 348 CDD OsENODL1_like 24 123 IPR041846 -
Seca4g09540 348 MobiDBLite consensus disorder prediction 131 208 - -
Seca4g09540 348 MobiDBLite consensus disorder prediction 126 323 - -
Seca4g09540 348 SUPERFAMILY Cupredoxins 22 123 IPR008972 -
Seca4g09540 348 Gene3D - 21 126 IPR008972 -
Seca4g09540 348 FunFam Early nodulin-like protein 1 22 127 - -
Seca4g09540 348 PANTHER BLUE COPPER PROTEIN 24 185 IPR039391 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09540 Seca-Chr4 225205295 225206450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09540 2 188 Phytocyanin Superfamily AT5G53870 52.500 1.65e-59 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09540 - - gmx:100795901 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09540 4 225205295 225206450 Seca4g09540 4 225205295 225206450 ECH