Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09508 ATGGAATCTACATGTTTTCATTCTAATGGGGAAGTCTCACTAAAGCAAAAATTGAAATCTACTTCAGCAGAGACAATAATCTCTAATAGTGAAAATGGTTGCTTTGATTGCAATATTTGCTTGGAATCAGCACATGACCCTGTGGTCACTCTTTGTGGTCACCTCTACTGTTGGCCATGTATATACAAGTGGCTTAATGTTCAAAGCTCCTCTGTTGAACCAGACCAGCATCAGACATGCCCAGTTTGTAAAGCTGAGATCTCTCACACTTCATTAGTTCCCCTTTATGGCCGTGGAACATCTAATTCAGAATCTGAGGCCAAGAAACTCCAGATGAGTCTAGGAATACCTCATAGACCACCTCCTTACAACTTGAATGCTATGTTAACTTCTAATCATCGTGCATCAAATTCACATCATGGTGAGCAACTCCATCCAAGTTATTTCCAGTCACAATCACGGCCATTTCATTATCAGCACTACATCCCTCACATTTATGGAGGTCATGGTGCCAATGGATTACCTTATCTTGGGGGTGCTGCAATGACTAGTTTCTTTAATCCTATGATTGGTATGTTTGGGGAAATGGTCTTGACAAGGATTTTTGGGGTCTCAGATGCAAATTTGTTTCCTTACACTCATAATGGAAGTGGCAGTCCTAGAATGAGAAGGCAGGAGATGCAGATTGACAAGTCTCTAAACAGAGTTTCTATGTTTCTTCTATGTTGTATCATATTGTGTCTTCTCTTATTCTGA 756 0.4021 MESTCFHSNGEVSLKQKLKSTSAETIISNSENGCFDCNICLESAHDPVVTLCGHLYCWPCIYKWLNVQSSSVEPDQHQTCPVCKAEISHTSLVPLYGRGTSNSESEAKKLQMSLGIPHRPPPYNLNAMLTSNHRASNSHHGEQLHPSYFQSQSRPFHYQHYIPHIYGGHGANGLPYLGGAAMTSFFNPMIGMFGEMVLTRIFGVSDANLFPYTHNGSGSPRMRRQEMQIDKSLNRVSMFLLCCIILCLLLF. 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09508 251 SUPERFAMILY RING/U-box 34 96 - -
Seca4g09508 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 14 248 IPR045103 GO:0005783|GO:0006511|GO:0061630
Seca4g09508 251 Pfam Zinc finger, C3HC4 type (RING finger) 37 83 IPR018957 GO:0046872
Seca4g09508 251 ProSiteProfiles Zinc finger RING-type profile. 37 84 IPR001841 -
Seca4g09508 251 FunFam E3 ubiquitin-protein ligase RMA1H1 10 104 - -
Seca4g09508 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 140 IPR013083 -
Seca4g09508 251 CDD RING-HC_AtRMA-like 35 85 - -
Seca4g09508 251 SMART ring_2 37 83 IPR001841 -
Seca4g09508 251 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09508 Seca-Chr4 224764619 224765374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09508 7 237 C3H Transcription Factor Family AT4G27470 48.936 4.05e-62 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09508 K10666 - gmx:100817526 378.252