Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09501 ATGGGGCCTCTTGTGATTTCTTCAAGTTTTCTTTTGTATCTTTTCTTGGTTCTCAGTGCAGTTAGGATCCACGTCCAAGCTAACGGTTGGCTTAACGCTCATGCAACGTTCTATGGGGCCAATCAAAATCCCACCAGCCTTGGGGGAGCTTGTGGTTATGACAATACCTTTCATGCTGGGTTTGGAGTTAACACTGCGGCGGTGAGCACTATGCTTTTCAGAGGGGGTGAGGTTTGTGGTGCTTGCTACCAAGTGATATGTGACTACCAGACTGACCCAAAATGGTGTCTTAGAAGCCGCAGTGTCACAGTAACTGCCACCAATTTTTGCCCTCCAAACAACCATGGAGGATGGTGTGACCCCCCACACCATCACTTTGACATGTCCATGCCTGCTTTCTTTCGCATTGCACGCCAAGGCAATGAAGGAATTGTTCCTGTCCTCTATAGAAGGGTGGCATGCAAAAGAAGAGGTGGAGTGAGGTTCACATTGAAGGGGCAATCCAATTTCAACATGGTGATGATATCCAACGTTGGTGGGAGTGGGGATGTGAAGGGCGTGTGGATAAGAGGATCGAGAAGTGGAACGTGGTTGCCAATGCACAGGAATTGGGGAGCTAACTGGCAAAGCAGTGCAGATCTGAGGAACCAGAGACTCTCATTCAAGATGACTTTGGTTGATGGGAAGACATTGGTGTTTCTCAATGTGGTGCCTTCTACTTGGAGGTTTGGACAGACATTTTCATCCCATAATCAGTTCTTTTAA 765 0.4758 MGPLVISSSFLLYLFLVLSAVRIHVQANGWLNAHATFYGANQNPTSLGGACGYDNTFHAGFGVNTAAVSTMLFRGGEVCGACYQVICDYQTDPKWCLRSRSVTVTATNFCPPNNHGGWCDPPHHHFDMSMPAFFRIARQGNEGIVPVLYRRVACKRRGGVRFTLKGQSNFNMVMISNVGGSGDVKGVWIRGSRSGTWLPMHRNWGANWQSSADLRNQRLSFKMTLVDGKTLVFLNVVPSTWRFGQTFSSHNQFF. 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09501 254 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Seca4g09501 254 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Seca4g09501 254 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Seca4g09501 254 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Seca4g09501 254 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Seca4g09501 254 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Seca4g09501 254 Pfam Expansin C-terminal domain 160 238 IPR007117 -
Seca4g09501 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 249 IPR007117 -
Seca4g09501 254 Gene3D - 18 155 IPR036908 -
Seca4g09501 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 159 IPR007112 -
Seca4g09501 254 SMART dpbb_1 65 149 IPR007112 -
Seca4g09501 254 CDD DPBB_EXPA_N 29 154 - -
Seca4g09501 254 PANTHER EXPANSIN-A15 11 253 IPR002963 GO:0009664
Seca4g09501 254 Pfam Lytic transglycolase 65 149 IPR009009 -
Seca4g09501 254 SUPERFAMILY PHL pollen allergen 156 249 IPR036749 -
Seca4g09501 254 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Seca4g09501 254 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Seca4g09501 254 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Seca4g09501 254 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Seca4g09501 254 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Seca4g09501 254 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Seca4g09501 254 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Seca4g09501 254 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Seca4g09501 254 Gene3D - 159 254 IPR036749 -
Seca4g09501 254 SUPERFAMILY Barwin-like endoglucanases 15 177 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09501 Seca-Chr4 224608259 224610070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09501 6 254 Expansin Gene Family AT3G15370 60.573 4.99e-122 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09501 - - gmx:106795376 492.271