Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09476 ATGCAGCAGGAGATGGCAGACATGGAGTCTCAAACTACTTTCAAAGCAACAGTGCAGGAGGAAGCACCTAATATCTTTCATAAGGGAAATCCTCCAGTGACACTCAAGTTTCATGATGTTGTATATAAAATGAAGGCCACAAAGTATGGATTACTTGAGAAGAACACAAAGACAGAAGAGAAAGTGATATTGAATGGAGTGACAGGTATGGTTCAACCTGGTGAAATTCTGGCCATGCTTGGTCCATCTGGAAGTGGCAAAACAACTCTGTTAACAGCATTGGGAGGGAGGCTTGGAGGGCAACTTTTTGGAAGCATAACTTACAATGGCAAACCCTTCTCAAATGCAATGAAGAGGAAAACTGGCTTTGTCACCCAAGATGATGTTCTCTATCCCCACTTGACTGTGACTGAAACTTTAGTATTTACTGCCCTTCTGAGATTGCCTTGTAGTTTCACCAAAGAAGAGAAAATTGCACATGCAAAATCTGTGATAGCTCAGCTTGGTTTAACCAAGTGCAAGGATAGCATCATTGGAGGCCCAACACTGAGAGGGGTTTCTGGTGGGGAAAGGAAAAGGGTTAGCATTGGACAAGAAATGCTCATAAACCCAAGCTTGTTGTTTCTAGATGAACCTACCTCTGGCCTAGACTCAACAACAGCTCAAAGAATTGTCTCAACTTTATGGGAGTTAGCAAGTGGAGGGAGAACTATTGTGATGACAATACACCAACCTTCAAGTAGGATCTACCACATGTTTCACAGGTTGTTGCTGCTATCAGAAGGGATTCCATTGTATTTTGGAAAAGGATCTGAAGCTATGGAATATTTTTCTAATATTGGATATGCCCCTGCAATGGCCATGAACCCCTCAGATTTCCTTTTGGATCTTGCAAATGGTGTCTATGCTGATCAATCGAACGAGGACCATGCCTTAAATAAGCATAAATTGAATTCCGAATATAAGAACTACTTTGATGCCAAATTGAAGCCAGTTCTTCATGAAATTCCTGACTATGATAAAAGTCAGGGTAGATTTGAAGACAATGGCTTTGAGAAATGGTCTACCAATTGGTGGCAACAATTCACTGTGCTACTAAAAAGAGATGTCAAAGAGAGAAAATATGAATCATTCTCTGGTATACGGATTTGTCAGGTCCTCATGGCTGCCCTTATTACAGGACTACTTTGGTATAAGTCTGATATTTCACACTTACAGGATCAGGTAAGAATTTTCAATTAA 1242 0.4066 MQQEMADMESQTTFKATVQEEAPNIFHKGNPPVTLKFHDVVYKMKATKYGLLEKNTKTEEKVILNGVTGMVQPGEILAMLGPSGSGKTTLLTALGGRLGGQLFGSITYNGKPFSNAMKRKTGFVTQDDVLYPHLTVTETLVFTALLRLPCSFTKEEKIAHAKSVIAQLGLTKCKDSIIGGPTLRGVSGGERKRVSIGQEMLINPSLLFLDEPTSGLDSTTAQRIVSTLWELASGGRTIVMTIHQPSSRIYHMFHRLLLLSEGIPLYFGKGSEAMEYFSNIGYAPAMAMNPSDFLLDLANGVYADQSNEDHALNKHKLNSEYKNYFDAKLKPVLHEIPDYDKSQGRFEDNGFEKWSTNWWQQFTVLLKRDVKERKYESFSGIRICQVLMAALITGLLWYKSDISHLQDQVRIFN. 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09476 413 SMART AAA_5 73 264 IPR003593 GO:0016887
Seca4g09476 413 CDD ABCG_EPDR 32 268 - -
Seca4g09476 413 Pfam ABC-2 type transporter 243 314 IPR043926 GO:0140359
Seca4g09476 413 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 35 286 IPR003439 GO:0005524
Seca4g09476 413 Pfam ABC transporter 64 214 IPR003439 GO:0005524
Seca4g09476 413 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 18 412 - -
Seca4g09476 413 FunFam ABC transporter G family member 22 51 280 - -
Seca4g09476 413 Gene3D - 52 281 IPR027417 -
Seca4g09476 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 280 IPR027417 -
Seca4g09476 413 ProSitePatterns ABC transporters family signature. 186 200 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09476 Seca-Chr4 224310800 224313452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09476 63 247 Calmodulin-binding Proteins AT2G36910 28.571 4.02e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09476 K05681 - gmx:100812397 644.81