Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09475 ATGGGAGTTCCAGAGAAGGACCCTCTCGCACAATTGAGCTTACCACCTGGTTTTAGATTCTATCCCACCGATGAGGAACTTCTTGTTCAGTACCTTTGCCGCAAGGTTGCTGGCCACCATTTTTCTCTGCCAATCATTGCTGAAATCGATTTGTACAAATTCGATCCTTGGGTCCTTCCAGTTAACGTTAATTTTTTCTTCTATGGTTCTAATTGTAATGGATGTGGTGCAGGGAAGGCGATTTTCGGTGAGAAAGAATGGTACTTTTTCAGCCCTAGGGACAGGAAGTACCCAAATGGTTCAAGACCAAACAGAGTAGCTGGCTCTGGGTATTGGAAAGCCACAGGAACTGACAAAATCATCACCACTGAAGGGAGAAAAGTTGGTATTAAAAAGGCACTTGTTTTCTACATTGGCAAAGCACCAAAAGGAACAAAAACGAATTGGATTATGCACGAGTATCGCCTTCTAGACTCTTCTAGAAAGAACAACATTGGCAGCTCCAAACTTGATGATTGGGTTCTCTGTCGCATATACAACAAGAAGAGCTCGAGCTTGCAAAAGGAAGCAATTCCAACGTTTTCGAGCAAAGAATACAGCAACGTTTCTTCTTCGCCTTCTTCTTCGTCCCACGTGGACGACATGCTTGACTTGCCGGAAATCGATGACCGTTGCTTCGCCCTGCCACGTGTGAACTCACTTCGAAATTTCCAGAACGACGAGAAGCTCGGGTTTCAGAACATGGGTGGTGGAATTTTCGGGGATTGGGTTAGCCCGACGGATCTCGATTCGGTACCCGAGTTTGTTACGGGTCAGGGGATGGTGAATTACGGTTGTAATGACCTTTATGCCCCTTCGGTGCCGCAGTTTAGCCACGTGGACTTGTCGGTTGAGGAGGAGGTTCAGAGCGGTGTGAGGAGGAACCAACCGGTTACCGATAGTTCCGCGTACTTTCAGCAGAATCCGAATGCGTTCTCACAGAGGTTATTACCGGGTCAACCTGACCCGTTTGGGTTCGGGTACTCGGGCCAGCAATTCGGGTTTGGGTTCCGAGATTGA 1059 0.4759 MGVPEKDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEIDLYKFDPWVLPVNVNFFFYGSNCNGCGAGKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRLLDSSRKNNIGSSKLDDWVLCRIYNKKSSSLQKEAIPTFSSKEYSNVSSSPSSSSHVDDMLDLPEIDDRCFALPRVNSLRNFQNDEKLGFQNMGGGIFGDWVSPTDLDSVPEFVTGQGMVNYGCNDLYAPSVPQFSHVDLSVEEEVQSGVRRNQPVTDSSAYFQQNPNAFSQRLLPGQPDPFGFGYSGQQFGFGFRD. 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09475 352 ProSiteProfiles NAC domain profile. 14 181 IPR003441 GO:0003677|GO:0006355
Seca4g09475 352 PANTHER NAC TRANSCRIPTION FACTOR 56 14 203 - -
Seca4g09475 352 Pfam No apical meristem (NAM) protein 15 156 IPR003441 GO:0003677|GO:0006355
Seca4g09475 352 FunFam NAC domain-containing protein 72-like 23 186 - -
Seca4g09475 352 SUPERFAMILY NAC domain 10 181 IPR036093 GO:0003677|GO:0006355
Seca4g09475 352 Gene3D NAC domain 23 186 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09475 Seca-Chr4 224299461 224301131 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09475 1 348 NAC Transcription Factor Family AT4G27410 58.120 4.03e-122 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca4g09475 NAM 2.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09475 - - gmx:100811301 497.664