Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09474 ATGGAGAGCACCGACTCATCCACCAGTTCGCAACAACCGAATCTGCCACCTGGGTTTCGGTTCCACCCCACCGATGAGGAACTTGTTGTTCACTATCTCAAGAAGAAGGTTGCCTCTGCTCCTCTCCCTGTTTCCATCATAGCTGATATTGATCTCTACAAGTTTGATCCATGGGAATTACCAGCTAAGGCATCGTTTGGAGAAGAAGAATGGTACTTTTTTAGCCCAAGGGATAGAAAATACCCAAACGGTGCAAGGCCAAACAGGGCTGCAATTTCTGGGTATTGGAAGGCTACAGGAACTGATAAGCCTGTGATGACCTCTGGTGGAACCCAAAAGGTTGGTGTGAAGAAATCTTTGGTCTTTTATGGTGGGAAGCCACCAAAAGGGGTGAAGACTCAATGGATCATGCATGAGTATCGTCTTGTTGATAACAAGCCTAACAATAAACCTCTTGGATATGACTTGGGCAACAAGAAAAACCCTCTAAGGGTAAATAAACCCTTTTTTCATGTCAAAATCCTGGATGATTGGGTGTTATGCCGGATCTACAAGAAGAGCTATACTACACAGAATTCTCCTATGGACCATGACAAGGATGATTCCATAGATGACATGATTAGAGGGGTACCTCCTTCAATCAATGTGGGCCAAATGAATGCGAGGTTTCACCTTTCAATGATGTCCACAAACTACAGTGCTGCATTGTTGGAAAATGACCGAAATGCTTTGGAAGGTGTGATCATAGGCAATGGTGGGATCAGCACAACAAGTTCCATATCTTCTCAGTTAGGAGCATCAAACTCAAAGGCAGAGCTTATTCCTTTTGTTTCAAATATCAATGCCTCTTCAAACACTACTACTTTAGCCTCCAAAAGAACACTATCATCACTCTATTGGAATGATGAGGATCATGTAGTTGGCACTTCATCACCTAACAAGCAGTTCAGTTTGGACAATGGTGGGAACAATGACAGTGTTGTGAATGACACTACTAATGGTTCTATTGCTACTACTCTGTTGCTTAACCAGCTCCCACAAACACCTTCATTGCACCAACAGACAATGTTGGGGTCTTTAGGAGATGGGCTACTTAGGACACCATATCAAATACAAGGGATGAATTGGTTTGGTTAA 1137 0.431 MESTDSSTSSQQPNLPPGFRFHPTDEELVVHYLKKKVASAPLPVSIIADIDLYKFDPWELPAKASFGEEEWYFFSPRDRKYPNGARPNRAAISGYWKATGTDKPVMTSGGTQKVGVKKSLVFYGGKPPKGVKTQWIMHEYRLVDNKPNNKPLGYDLGNKKNPLRVNKPFFHVKILDDWVLCRIYKKSYTTQNSPMDHDKDDSIDDMIRGVPPSINVGQMNARFHLSMMSTNYSAALLENDRNALEGVIIGNGGISTTSSISSQLGASNSKAELIPFVSNINASSNTTTLASKRTLSSLYWNDEDHVVGTSSPNKQFSLDNGGNNDSVVNDTTNGSIATTLLLNQLPQTPSLHQQTMLGSLGDGLLRTPYQIQGMNWFG. 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09474 378 SUPERFAMILY NAC domain 6 186 IPR036093 GO:0003677|GO:0006355
Seca4g09474 378 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Seca4g09474 378 Gene3D NAC domain 24 190 IPR036093 GO:0003677|GO:0006355
Seca4g09474 378 MobiDBLite consensus disorder prediction 1 20 - -
Seca4g09474 378 PANTHER NAC TRANSCRIPTION FACTOR 56 15 228 - -
Seca4g09474 378 MobiDBLite consensus disorder prediction 1 17 - -
Seca4g09474 378 ProSiteProfiles NAC domain profile. 15 186 IPR003441 GO:0003677|GO:0006355
Seca4g09474 378 FunFam NAC transcription factor 56 24 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09474 Seca-Chr4 224252975 224254815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09474 1 377 NAC Transcription Factor Family AT3G15510 50.900 1.57e-116 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca4g09474 NAM 1.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09474 - - vra:106763825 517.309