Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09460 ATGGAAACCCCACCTTCGGATGGATCAGTTTTGAAGCGTTCGCTGAGGAAGAAAGCGAATTTGCGCAGCTACGATGAGGGTCTGATGGATGAGTTGTTTGAGAAGCAGTTGGGTGGTGGTTTGAAGAAGAGGAGTAAGACCAAAGAAGATTTGGAGAAAGAGACTGAAACTGAGGCTATGATTGCCTTCTCGCTCGGTTTCCCTATTGATGCTTTGCTTGAGGATGAGGTTAGGGCTGGGGTTGTGAAACAATTGGGTGGGAAGGAGCAGAATGATTATATTGTTATAAGGAATCATATACTGGCTTTGTGGAGGGGGAATGTGAGGATTTGGTTGACAAAAGGACAGATTAGAGAAACTGTGAGTAGTGAGTATGAACATTTGCTTAACTCTGCCTATGACTTCCTTTTGCATAATGGATACATAAATTTTGGGGTCTCGCCTTCGTTTACTTCTCAGTTGCCTGAGCCAACTGAAGGGACTGTGGTTGTTATCGGTGCTGGCCTTGCAGGGTTAGCTGCTGCAAGGCAGCTCTTGTCATTTGGTTACAAGGTGGTGGTTTTGGAAGGCAGGAACCGTCCTGGTGGCAGAGTTTATACCCAGAAGATGGGGGGCAAGGGTAAATTTGCTGCCATAGATCTTGGTGGGAGTGTGATCACTGGGATTCATGCTAACCCTTTGGGGGTTCTGGCTCGGCAGCTTTCTATACCGCTTCATAAAGTCAGAGATAATTGCCCTTTATACAAGCCAAATGGGGCACCGGTTGATAAGGAAACAGACACAAATGTTGAATTTGTATTTAATAGGTTGCTTGACAAAGTTATGGAGCTGAGGCAAATTATGGGTGGGTTTGCAAGCGATACCTCTCTTGGTTCAGTCTTGGAGACACTCAAGCATTTGTATGCTGTGGCTCGAAGTACTGATGAGAAGCAATTGCTTGACTGGCACCTTGCAAATTTAGAATATGCAAATGCTGGATGTCTTTCAAATCTTTCAGCTGCCTATTGGGATCAGGATGATCCTTATGAAATGGGTGGTGATCATTGCTTTCTTGCTGGAGGCAATTGGAGATTGATCAAAGCTTTATGTGAAGGAGTTCCTATTTTTTATGGAAAGACCGTCAACACTATCAGATATGGAAATGAGGGTGTTGAGGTTATTGCTGGGGATCAAGTCTTTCAGGCAGATATTGTCTTGTGCACTGTGCCTCTTGGAGTTCTGAAAAAGAAGGCCATCAGTTTTGAACCTGAATTACCTGCAAGAAAGCTGGCAGCAATTGAGAGGATGGGGTTTGGGCTTCTGAACAAAGTTGCTATGGTTTTTCCTTGTGTGTTTTGGGGGGAAGACCTGGACACATTTGGATCTCTCAATGAACACAGTCATCAACGTGGGGAATTCTTCTTATTTTACAGTTATCATACTGTTTCTGGTGGCCCAGGCCTTATTGCATTGGTGGCTGGTGAAGCTGCACAAATCTTTGAATCCACAGATCCATCCATTTTGCTCCATCGGATTTTGACTGTTCTAAAAGAAAATGTGGGGAATCGACTGTTCTTTGCTGGTGAGGCCACAAGTAGGCAATATCCAGCCACTATGCATGGTGCTTTCTTAAGTGGCTTGAGAGAAGCTTCACGGATTTACCAATCAGCCCGTGTTCGGCAAAATTATCCTAAGAAGTGCATGCCTAAGAATATGGGACCAAACAATGATATGCTGGTTGATTTATTCAAGAAGCCTGATGTACAATCTGGGAAGTTTTGTTTCATATTTGATCCTTCATCAGAAAGTCCGCAGTCAATGGGGCTTCTGCAAATCACTTTTGGTGGTAGTGAAGAAAGTTACAAGGAGCTAATAAACAGCTATCCGAATCCCACAAAGTTGCCATTGCAGCTTTACACCATTATATCTCGTGAACAAGTGAACCAACTACAACAAATTGAAGGAGGGGATGAAAGTAGGTTGTCATATTTGATAAAAAGCCTTGGGTTAAAGCTTATGGGGTCAAATGCTTTATATAATGCAGACACTAGTTGGCAGAAAATGCCTTACAGAAGAAAAGTTCCCATATCTGCAAAGCCGAAGGCTCAAACCTACCTTTACAAAGAAAATGATTTTATCAAAAGAAAAAGACGCGGTATATTAGCTCGTCATAGGCAAATGCTAGAACCCTTGTACGAGGATTTTCATCGGATTGGTGCTGGGAAATTCGGAGATGTTTTCAGGTGCAGGGACCGATTGACTCAACAAGATGTGGCCGTCAAGATTATCACTATTCCAGAAAATGAGAAAAGAAATGGACTTCCATGTAGAATCATAAGAGAAGTCTCTATTCTTAAAGAGTTGGATCATATCAATGTTGTGAGGTTGCTGGATGTGCTGGGCAATGAGGATGATGTATATCTTGTTTTCGAGTATCTTGACCTTGATCTCCATAAATTCGTGACCAATACAATTCTATACAGATATCCAAGACTAGTAAAAAATTTTCTACATCAAATTCTTTCTGGAGTAGCATACTGCCATTCTCAAAAAATTCTTCACAGAGATTTGAAACCTCAGAATATTCTGATTCATTTCCGTACCCATGTACTGAAGATAGCAGACTTTGGTGTGGCCAGAACATTTGAAGTTCCTCTTTCATCGTACTCTAATGATGTGGGTTCTCCTTGTTATAGGGCACCTGAAATTTTGTTTGGCTCCACCGATTACTCAACTCCAATTGATATGTGGTCTGTGGGTTGTATATTTGCTGAGATTCTTAGTGGCAAGCCTCTGTTCGTTGGTCAAAGTGAATGGGATATATTGCATGGGATATTTAGCGTGCTTGGTACTCCAACAGAAGAAACCTGGCCTGGACTGTCTTCTGTATGCAACTTCATGCAAGCACTCAGCCCCCCAATGGAGCCAAAGGACCTAATACAAGTGGTACATGATCTCAACCCTAATGGTGTTCCTCTCGACTCAATTGGTGCTGATCTTCTTTCGAGATTGCTTTGCGTATGTCCAACGTATCGAATTTCAGCTGAGGAAGCTGTTGTCCACCCATATTTGGATGGTATATGA 3063 0.4261 METPPSDGSVLKRSLRKKANLRSYDEGLMDELFEKQLGGGLKKRSKTKEDLEKETETEAMIAFSLGFPIDALLEDEVRAGVVKQLGGKEQNDYIVIRNHILALWRGNVRIWLTKGQIRETVSSEYEHLLNSAYDFLLHNGYINFGVSPSFTSQLPEPTEGTVVVIGAGLAGLAAARQLLSFGYKVVVLEGRNRPGGRVYTQKMGGKGKFAAIDLGGSVITGIHANPLGVLARQLSIPLHKVRDNCPLYKPNGAPVDKETDTNVEFVFNRLLDKVMELRQIMGGFASDTSLGSVLETLKHLYAVARSTDEKQLLDWHLANLEYANAGCLSNLSAAYWDQDDPYEMGGDHCFLAGGNWRLIKALCEGVPIFYGKTVNTIRYGNEGVEVIAGDQVFQADIVLCTVPLGVLKKKAISFEPELPARKLAAIERMGFGLLNKVAMVFPCVFWGEDLDTFGSLNEHSHQRGEFFLFYSYHTVSGGPGLIALVAGEAAQIFESTDPSILLHRILTVLKENVGNRLFFAGEATSRQYPATMHGAFLSGLREASRIYQSARVRQNYPKKCMPKNMGPNNDMLVDLFKKPDVQSGKFCFIFDPSSESPQSMGLLQITFGGSEESYKELINSYPNPTKLPLQLYTIISREQVNQLQQIEGGDESRLSYLIKSLGLKLMGSNALYNADTSWQKMPYRRKVPISAKPKAQTYLYKENDFIKRKRRGILARHRQMLEPLYEDFHRIGAGKFGDVFRCRDRLTQQDVAVKIITIPENEKRNGLPCRIIREVSILKELDHINVVRLLDVLGNEDDVYLVFEYLDLDLHKFVTNTILYRYPRLVKNFLHQILSGVAYCHSQKILHRDLKPQNILIHFRTHVLKIADFGVARTFEVPLSSYSNDVGSPCYRAPEILFGSTDYSTPIDMWSVGCIFAEILSGKPLFVGQSEWDILHGIFSVLGTPTEETWPGLSSVCNFMQALSPPMEPKDLIQVVHDLNPNGVPLDSIGADLLSRLLCVCPTYRISAEEAVVHPYLDGI. 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09460 1020 CDD STKc_CDK_like 725 1017 - -
Seca4g09460 1020 ProSiteProfiles Protein kinase domain profile. 725 1017 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09460 1020 SUPERFAMILY FAD-linked reductases, C-terminal domain 430 512 - -
Seca4g09460 1020 ProSitePatterns Protein kinases ATP-binding region signature. 731 754 IPR017441 GO:0005524
Seca4g09460 1020 ProSitePatterns Serine/Threonine protein kinases active-site signature. 845 857 IPR008271 GO:0004672|GO:0006468
Seca4g09460 1020 FunFam Mitogen-activated protein kinase 806 1020 - -
Seca4g09460 1020 SUPERFAMILY Homeodomain-like 54 157 IPR009057 -
Seca4g09460 1020 Gene3D - 512 545 IPR036188 -
Seca4g09460 1020 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 161 183 - -
Seca4g09460 1020 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 514 529 - -
Seca4g09460 1020 FunFam Lysine-specific histone demethylase 1A 57 156 - -
Seca4g09460 1020 SMART serkin_6 725 1017 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09460 1020 ProSiteProfiles SWIRM domain profile. 52 153 IPR007526 GO:0005515
Seca4g09460 1020 Gene3D - 162 428 IPR036188 -
Seca4g09460 1020 Pfam SWIRM domain 74 144 IPR007526 GO:0005515
Seca4g09460 1020 Gene3D Transferase(Phosphotransferase) domain 1 810 1020 - -
Seca4g09460 1020 PANTHER FLAVIN MONOAMINE OXIDASE 509 549 - -
Seca4g09460 1020 SUPERFAMILY Protein kinase-like (PK-like) 722 1019 IPR011009 -
Seca4g09460 1020 Pfam Flavin containing amine oxidoreductase 169 512 IPR002937 GO:0016491
Seca4g09460 1020 Pfam Flavin containing amine oxidoreductase 515 546 IPR002937 GO:0016491
Seca4g09460 1020 Gene3D - 244 511 - -
Seca4g09460 1020 SUPERFAMILY FAD/NAD(P)-binding domain 158 548 IPR036188 -
Seca4g09460 1020 Pfam Protein kinase domain 725 1017 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09460 1020 Gene3D - 57 155 IPR036388 -
Seca4g09460 1020 Gene3D Phosphorylase Kinase; domain 1 717 807 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09460 Seca-Chr4 224075296 224086987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09460 725 1017 Core Cell Cycle Gene Families AT3G48750 48.639 4.19e-90 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Seca4g09460 Amino_oxidase 9.2e-59 CL0063
TR SWI or SNF-SWI3 Seca4g09460 Amino_oxidase 9.2e-59 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09460 - - gmx:100809901 1105.89