Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09453 ATGAACGAGAAGGCCAACGTTTCTAAGGAACTCAACGCCAAGCACAGAAAGATACTGGAAGGACTTCTTAAATTACCAGAGAATAAGGAATGTGCTGACTGCAAAGCTAAAGGCCCGAGATGGGCTAGTGTCAATCTTGGCATCTTTATATGCATGCAGTGTTCAGGAATACATCGAGGCCTTGGGGTACACATCTCAAAGGTAATGTTTGTTCCTTGTCATGGTTCGCTCTGCTACTTTGGACACCTGGCTTCCAGAGCAGCGATGGGAAATGAGAAGGCAAATAGTTACTGGGAAGCAGAATTACCCCCAAATTATGATAGAGTTGGAATTGAAAATTTCATTCGTGCAAAGTATGAAGAGAAGAGATGGGTTGCAAAGGATGGTAGGCCAAAACCACCTTCGAGTCTGCGAGAAGAGAAAACTCCTTCAGATTGGCAAAGGCCTGTCGAAAGAGGTGGGCATAGTTATGCAGCTGCATCTGAGAATACTTCTGAGGAAAGGAGGAAAATCCAACCATCAAATGCAATTCCTGCCACAAGAATTAGTGTTCCTGCTCCTCCCAAAGGACCTACGCTGGTAACTCCTGTGAACAAACCTCAGCATATCGAGAAAGTGGAACCTGTGGTGCCACAACCACAGGCTGAAACTTCACAGACTGCTAGCACAGCTCAAAATTCCACTCCAAAAGTTGACTATGCTACAGACCTTTTTGACATGTTGTCTATGGATGGTCCAAGTGAAAAGGACTCAGGGGCAGCTGATGCTACTGCCGACGATAATAACTGGGCAGGTTTTCAGTCTGCTGCAGAGACATCGACAGCTGAGAAGACTGATACTGTGAAAGTGGTTGAGAGTACACCCCAGTCCACGTCGGGGATTGAGGATCTATTTAAAGATTCACCTTCTGTGACACCAAGCTCAGCTCCAGAAAAACCACAAAAAGATGTTAAAAATGATATCATGAGCCTCTTTGAGAAGACCAATATGGTGTCTCCATTTGCTATGCATCAACAACAGCTAGCTATGCTGGCACAGCAACAGTCTCTTCTGATGGCTGCTGCTGCTAAATCTGCTGGTGGGGATTCCAAGCATCCCGCTAGCGTACAACAACCTGGGGCCAACATTCCTGTCCAAAGTTGGCCAGCTGCTAGTTACCCAATTCCAGGAGTAGTGCCCGTTGGTTCTCAGGGAGAATTGCAGAAACTAATGCAGACAATGAACATCACTTCAGCACATCCAGCAGGGAGCTCAGTTCAGTATCCACCATCTAGTTACTATACTATGGGGCAAGTTGCTCCAGCTAATGGTATGATGACAACGGGAGCGAGTAAACCTCAGTCACCAGCTCCGGTATCATCAACCACTTCACAAACGGGAAATGATTATGATTTTTCCTCCTTAACACAAGGAATGTTTGCGAAACACTGA 1431 0.4598 MNEKANVSKELNAKHRKILEGLLKLPENKECADCKAKGPRWASVNLGIFICMQCSGIHRGLGVHISKVMFVPCHGSLCYFGHLASRAAMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVAKDGRPKPPSSLREEKTPSDWQRPVERGGHSYAAASENTSEERRKIQPSNAIPATRISVPAPPKGPTLVTPVNKPQHIEKVEPVVPQPQAETSQTASTAQNSTPKVDYATDLFDMLSMDGPSEKDSGAADATADDNNWAGFQSAAETSTAEKTDTVKVVESTPQSTSGIEDLFKDSPSVTPSSAPEKPQKDVKNDIMSLFEKTNMVSPFAMHQQQLAMLAQQQSLLMAAAAKSAGGDSKHPASVQQPGANIPVQSWPAASYPIPGVVPVGSQGELQKLMQTMNITSAHPAGSSVQYPPSSYYTMGQVAPANGMMTTGASKPQSPAPVSSTTSQTGNDYDFSSLTQGMFAKH. 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09453 476 Pfam Putative GTPase activating protein for Arf 17 127 IPR001164 GO:0005096
Seca4g09453 476 MobiDBLite consensus disorder prediction 126 148 - -
Seca4g09453 476 MobiDBLite consensus disorder prediction 212 230 - -
Seca4g09453 476 CDD ArfGap 19 119 - -
Seca4g09453 476 MobiDBLite consensus disorder prediction 241 260 - -
Seca4g09453 476 SMART arf_gap_3 16 132 IPR001164 GO:0005096
Seca4g09453 476 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 476 IPR044520 GO:0005096
Seca4g09453 476 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Seca4g09453 476 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Seca4g09453 476 MobiDBLite consensus disorder prediction 270 312 - -
Seca4g09453 476 FunFam stromal membrane-associated protein 1 isoform X1 1 130 - -
Seca4g09453 476 MobiDBLite consensus disorder prediction 270 315 - -
Seca4g09453 476 SUPERFAMILY ArfGap/RecO-like zinc finger 15 126 IPR037278 -
Seca4g09453 476 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Seca4g09453 476 MobiDBLite consensus disorder prediction 438 464 - -
Seca4g09453 476 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 132 IPR001164 GO:0005096
Seca4g09453 476 MobiDBLite consensus disorder prediction 126 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09453 Seca-Chr4 223957471 223963803 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09453 2 125 C2H2 Transcription Factor Family AT4G05330 39.130 1.28e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09453 K12486 - gmx:100807561 708.368