Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09449 ATGATGCTATCAGCTTCGCCATGCTCGCTTACGAGAAGCTCGCTGGAAGAGATGCTTGATTCGCTTCGCCGGAAGGATGAGGAGGAAGAGAAGAAGAAGGACCTGCCGCCGGCGTTGCCTGCACGGCCGGCTTCACGGGCCCGGCTTCCTCCGGCACGGCGGTCGCTGCCGAATAACTTCAAGGTCGGTGACAGCGACGGTGGCGCAGTGGAGAATGGATTTGGTGGCAATGGAGAGAGTAAGAGGAAGGAAACAGGTTTTGGACACATGAGAAGAGGAAGCAGTTTTGGGAGCAAGAGGATGAAGAAGGATGTGGAGTGCCCTTACGTGGCAGCACTTTCAGCATCCACTGCTTCTGTGGCTTCATCAGGGATGGTTTTGGAATTCGATGGTGACAGTGTTTCTTATTTCATGAAAACGAAACTTCGTGTTTGGTGTAGGCAACCAAGAGGACAATGGGAACTAGGATCAGTACAGTCAACTTCAGGGGAGGAAGCATATGTTTCACTCTCAAATGGAAATGTTGTAAAAGTGGCCAGATCAGAGCTTGTACCAGCCAATCCTGATATTTTAGAGGGTGCGGATGATCTTATTAAACTTGGTTATGTGAATGAGCCATCGGTTCTTCACAATCTTAAGCTTAGATATTCTCAGGAGATGATTTATAGTAAAGCAGGGCCCATTTTGATTGCACTCAATCCTTTCAAAAGTTTCCAGATTTATGGAAATGATCATGTCTCCACTTATAGGCAGAGATTTATTGATAGTCCTCATGTTTATGCTATGGTAGAAGCAGCTTATAACAAAATGATAAGAGGTGAATATCCTCTCTCCTCCTTTGAGATCTTTGAGCTGTACTCCAACTGTAAGTTTATAAAGGTTTTCTATTTGACATTTTTGTATCTTGCAGATGAAGTGAATCAGTCCATTATCATAAGTGGTGAGAGTGGATCTGGGAAGACAGAGACAGCTAAAATTGCTATGCAATACTTAGCTGCTCTTGGTGATGGCAGTTGTGGGATAGAAAATGAAATTCTTCAGACAAATTGTATACTTGAAGCTTTTGGGAATGCAAAAACAGCTATAAATGACAACTCCAGCAGATTTGGAAAGTTGATTGAAATTCATTTCAGCACCATGGGTAAAATATGTGGGGCTAAAATTCAAACCTATCTGTTGGAAAAGTCAAGAGTTGCTCAACTGGCCAATTGTGAGAGGTCGTATCACATATTTTATCAACTTTGTGCTGGATCTTCATCTCGTCTTAAAGAGAGCTTGAATCTTAGAGCAGCTAGTGAATATAAATATCTAAATCAGAGTGACTGCATGACGATTGATGGTGTTGATGATGCTAAAAAGTTTCATCAGCTGACGAAAGCACTGGATACTGTTCAAATCTGTAATGAGGATCGAGAGCTGATCTTTAAGGTGCTTGCTGCAATACTATGGCTTGGAAATATATCATTCCAAGTTACTAACAGTGGAAATCATATTGAGGTTGTCGATGATGAAGCTGTAACCAATGCTGCCCTGCTGATGGGTTGCAGTTCCAAGGAATTAATGGAAGCATTATCTACCCATAAGATCCAATCTGACAAGGATACTATTGCTAAAAGTTTGACATTGCGGCAGGCAATTGATACTAGAGATGCACTTGCAAAATTTATGTACGGAAGCTTGTTTGACTGGCTTGTAGAACAAGTTAACAAATCACTTGTGGTGGATAAAAAATGTACTGGGAAATCCATAAGTATCCTTGATATTTTTGGGTTTCAGTCATTACAGAAAAATGGCTTTGAACAATTTTGTATAAATTATGCCAATGAGAGGCTTCAACAACATTTTAATCGGCATCTGTTTAAATTGGAGCAGGAGGACTATGAATCGGATGGCATCGATTGGACTAAAGTAGATTTTGTGGACAATCAAGAGTGCTTGGATCTATTTGAGAAGAAACCACTGGGTCTATTCTCTTTGTTGGACGAGGAATCAGATTTCCCCAAGGCTTCTGATTTAACATTTGCTAACAAACTTAAGAAACACCTGGACGCTAATCCTTGCTTCAAAGGGGAAAGAGGCAGAGCTTTCGGTGTTCGTCACTATGCAGGGGAGGTTTTGTATGATACAAATGGCTTTCTAGAAAAGAACAGAGATACATTGTCTTCTGATTCCATTCAACTCCTGTCATCATGTGATTGTGAACTGCTGCAATTGTTCTCCAAAATGTTCAACCAGTCTCAGAAGCAACCAAATTCCCCCTTCCACATTGATGCACTGGATTCACAGAACCAGGGTGTTGGAACAAAATTCAAGGGTCAAGTGTTCAAGTTGATGCATCAGTTGGAGAGCACCACTCCTCACTTTATTCGCTGTATAAGGCCAAATACCAAGCAGCTTCCTGGCATTTATGATGATGACCTTGTCCTACAACAGCTCAGGTGTTGTGGAGTTCTAGAAGTTGTTAGAATCTCAAGGGCTGGATATCCTACCCGAATGACCCATCAAGAGTTTTCCAGAAGGTATGCATTTTTGTTCTCTGAGGCCAACATATCTAAGGACCCATTGAGCATCTCAGTTGCTGTTTTGCAAAAATTTAATATCCCTTCTGAAATGTATCAAGTTGGCTTCACCAAACTGTATCTTCGAGCTGGGCAGATTGATGCACTGGAGGATAAGAGAATGCAGGTTTTGCAGGGAATAATTGGGATTCAAAAATGCTTCCGTGGTCATCAAGCTCGCAGTTATTTCCGTGAACTTAAGAATGGAGTTGCGACATTACAATCATTTATTCGTGGAGAAATTACGAGAAGGAAATGTCGTGTTGTGATGAAGTCTTCTATAACTATTTATTCTAAAAAACTTGAGGAGATCCATGCAATCATACTACTACAATCTGTAATTCGTGGGTGGCTGGTTCGAAGGGATTCTAGTCACATGAATAAGTTGAGGAAAGATCATGAGAATGCAAAACCTAGACGGAAGTCTCGTGTAAAGTTGCCGGAATTAAAGGATTTGTCCAAAGAGCTGGTTCAGAATCTGCCTTCAGCTTTAGCAGAACTCCAAAAGCGGGTTTACAAGGCTGAAGTAATTGTAGAGCAGAAGGAAGAGGAAAATAATGAATTGAGGGAACAACTAAAACAATCTGAGAAAAAGAGGGATGAATACGAAGCAAAGATGAAATCAATGGAGGAGGCATGGCAAAAGCAGATGGCATCTTTGCAAATGAGTCTTGTTGCTGCTAGAAAAAGCCTTGCTTCTGATAATGCCACTGTTCAACCTGTAAGACATGATCTTGTGTCACCTCGTGGCTATGAATCTGAAGATGCTACATCCATGGGATCTCGGACACCTGGTGGAAGCACACCTATAAAGTTCTCTGGTAGTCTTTCTGTCTCTGATATCGGGAGACATGCTAATGGTACATTGACCACAGTCAGCGATTTAATGAAGGAATTTGAGCAGCGAAGACAGATCTTCGATGGTGAAGTGAGAGCTCTGAATGAGGTTAAACCAAGTCAGTCTGCTAACACAAATTCCATGGAAGAACTTCGAAAACTTAAACAGAGATTTGAGGGATGGAAGAAACAATACAAAGTTAGACTACGTGAGACAAAATCAAAGCTTCTTAAATCAGGGAATTCAGAAACAGATAAAAGTCGGTGGACATGGTGGGGGAAACTAGGTTCAAGAGCATAA 3696 0.4148 MMLSASPCSLTRSSLEEMLDSLRRKDEEEEKKKDLPPALPARPASRARLPPARRSLPNNFKVGDSDGGAVENGFGGNGESKRKETGFGHMRRGSSFGSKRMKKDVECPYVAALSASTASVASSGMVLEFDGDSVSYFMKTKLRVWCRQPRGQWELGSVQSTSGEEAYVSLSNGNVVKVARSELVPANPDILEGADDLIKLGYVNEPSVLHNLKLRYSQEMIYSKAGPILIALNPFKSFQIYGNDHVSTYRQRFIDSPHVYAMVEAAYNKMIRGEYPLSSFEIFELYSNCKFIKVFYLTFLYLADEVNQSIIISGESGSGKTETAKIAMQYLAALGDGSCGIENEILQTNCILEAFGNAKTAINDNSSRFGKLIEIHFSTMGKICGAKIQTYLLEKSRVAQLANCERSYHIFYQLCAGSSSRLKESLNLRAASEYKYLNQSDCMTIDGVDDAKKFHQLTKALDTVQICNEDRELIFKVLAAILWLGNISFQVTNSGNHIEVVDDEAVTNAALLMGCSSKELMEALSTHKIQSDKDTIAKSLTLRQAIDTRDALAKFMYGSLFDWLVEQVNKSLVVDKKCTGKSISILDIFGFQSLQKNGFEQFCINYANERLQQHFNRHLFKLEQEDYESDGIDWTKVDFVDNQECLDLFEKKPLGLFSLLDEESDFPKASDLTFANKLKKHLDANPCFKGERGRAFGVRHYAGEVLYDTNGFLEKNRDTLSSDSIQLLSSCDCELLQLFSKMFNQSQKQPNSPFHIDALDSQNQGVGTKFKGQVFKLMHQLESTTPHFIRCIRPNTKQLPGIYDDDLVLQQLRCCGVLEVVRISRAGYPTRMTHQEFSRRYAFLFSEANISKDPLSISVAVLQKFNIPSEMYQVGFTKLYLRAGQIDALEDKRMQVLQGIIGIQKCFRGHQARSYFRELKNGVATLQSFIRGEITRRKCRVVMKSSITIYSKKLEEIHAIILLQSVIRGWLVRRDSSHMNKLRKDHENAKPRRKSRVKLPELKDLSKELVQNLPSALAELQKRVYKAEVIVEQKEEENNELREQLKQSEKKRDEYEAKMKSMEEAWQKQMASLQMSLVAARKSLASDNATVQPVRHDLVSPRGYESEDATSMGSRTPGGSTPIKFSGSLSVSDIGRHANGTLTTVSDLMKEFEQRRQIFDGEVRALNEVKPSQSANTNSMEELRKLKQRFEGWKKQYKVRLRETKSKLLKSGNSETDKSRWTWWGKLGSRA. 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09449 1231 ProSiteProfiles IQ motif profile. 919 948 IPR000048 GO:0005515
Seca4g09449 1231 Gene3D - 594 784 - -
Seca4g09449 1231 Pfam Myosin head (motor domain) 195 272 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca4g09449 1231 Pfam Myosin head (motor domain) 303 882 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca4g09449 1231 Gene3D - 406 462 - -
Seca4g09449 1231 Gene3D - 828 895 - -
Seca4g09449 1231 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 139 188 IPR004009 GO:0003774|GO:0005524|GO:0016459
Seca4g09449 1231 Gene3D Kinesin motor domain 191 273 IPR036961 -
Seca4g09449 1231 Gene3D Kinesin motor domain 303 827 IPR036961 -
Seca4g09449 1231 FunFam Unconventional myosin-XIX 594 784 - -
Seca4g09449 1231 ProSiteProfiles IQ motif profile. 956 985 IPR000048 GO:0005515
Seca4g09449 1231 Gene3D - 899 946 - -
Seca4g09449 1231 ProSiteProfiles IQ motif profile. 898 925 IPR000048 GO:0005515
Seca4g09449 1231 SMART MYSc_2a 186 895 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca4g09449 1231 SMART iq_5 918 940 IPR000048 GO:0005515
Seca4g09449 1231 SMART iq_5 955 977 IPR000048 GO:0005515
Seca4g09449 1231 SMART iq_5 895 917 IPR000048 GO:0005515
Seca4g09449 1231 MobiDBLite consensus disorder prediction 1107 1121 - -
Seca4g09449 1231 PANTHER MYOSIN 185 1213 - -
Seca4g09449 1231 Coils Coil 12 32 - -
Seca4g09449 1231 FunFam Myosin heavy chain 406 462 - -
Seca4g09449 1231 ProSiteProfiles Myosin motor domain profile. 192 894 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca4g09449 1231 MobiDBLite consensus disorder prediction 17 37 - -
Seca4g09449 1231 Gene3D Myosin VI head, motor domain, U50 subdomain 463 571 - -
Seca4g09449 1231 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 979 IPR027417 -
Seca4g09449 1231 PRINTS Myosin heavy chain signature 582 610 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca4g09449 1231 PRINTS Myosin heavy chain signature 635 663 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca4g09449 1231 PRINTS Myosin heavy chain signature 350 377 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca4g09449 1231 PRINTS Myosin heavy chain signature 222 241 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca4g09449 1231 CDD MYSc_Myo8 206 882 IPR036022 -
Seca4g09449 1231 Coils Coil 1017 1065 - -
Seca4g09449 1231 MobiDBLite consensus disorder prediction 1 16 - -
Seca4g09449 1231 Coils Coil 1176 1196 - -
Seca4g09449 1231 Pfam IQ calmodulin-binding motif 900 917 IPR000048 GO:0005515
Seca4g09449 1231 Pfam IQ calmodulin-binding motif 958 974 IPR000048 GO:0005515
Seca4g09449 1231 MobiDBLite consensus disorder prediction 1102 1121 - -
Seca4g09449 1231 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09449 Seca-Chr4 223885126 223897441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09449 1 1228 Myosins gene family AT5G54280 58.610 0.0 1451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09449 K10357 - gmx:100802074 1701.8