Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09446 ATGGCCACAGAGCGAGAAATCTCACGTGCTTCGCGCATGCACGACTACACCACCACGGACGACGAAGACGACGTCGTTGAGGACAGCGAACTGGAGCGCGACGAAGAAGAAGAAAAGCAAAACCGACAACACGAGGGAGAATTAGAGAACGAGGCTTCCTGCGCAAGGAGGTCCTATACGGGTCGGGTTGTGGATCCGAGAGAGAAATGGGTTCAGGAATGGAACAGAGTGTTCCTGTTAGTGTGCGCTGCGGGCTTATTCGTGGATCCTCTCTTCTTCTACGCGCTCTCCATCAGCGACTCTTGCATGTGCCTCTTCGTTGACGGTTGGTTCGCCGTTACCGTAACGGTGCTCCGTTGCATGACCGACGCCTTGCACCTCTGGAACATTTTGTTGCGCTTCAAAATGGCCAAACGCTCATTCGGTTTCGGCGGTGGTACTGGCGCCGCCGCAGATGCCGGTAGCTCCGTCGCTCTTCGCTATCTCAAGTCACGGAGAGGATTCTTCTTTGATTTCTTTGTCATTCTTCCTATTCCTCAGATTGTGCTTTGGGTGGCAATCCCATCCCTGTTGGAGAAAGGTTCAGTTACTGTGGTTATGACAGTAATGTTAATTATGTTTCTGTTCCAATACCTTCCCAAAATTTACCATTCAGTTTGCCATTTGAGACGCACACAAAACCTCTCTGGCTACATTTTTGGGACTGTTTGGTGGGGTATCGCCCTTAACATGATCGCCTATTTTGTCGCTTCCCATGCAGCAGGGGCATGTTGGTACTTGTTGGGGATCCAAAGGGCAGGGAAGTGTCTGAAAGAGGAGTGTGCAAAAACAAGTGGTTGTGGCATTAAAATGCTGTCTTGCCATAAGCCTATGTATTATGGAAGCAGTAGCTTAATGGATAGGGAGAGAGGAAGATTGGCGTGGGCAGAGAACAGGGAAGCAAGGTCTACATGCTTAAATGGTCCCGATAGTTACAACTATGGAGCTTATAAATGGACTGTTCAACTTGTCACTAATGATAATCGATTGGAAAAGATACTTTTCCCTATCTTCTGGGGCCTAATGACACTCAGCACATTCGGGAACCTAGAGAGCACGACGGAATGGCTTGAAGTAGTTTTCAACATCATTGTGTTGACCAGTGGCCTTCTTCTTGTCACTATGTTGATTGGAAACATCAAGGTGTTTTTGCATGCAACAACATCAAAGAAACAAGCGATGCAATTGAAGATGAGAAACATTGAATGGTGGATGAGGAAAAGGAGGTTGCCACAAGGGTTTAGGCAGCGCGTGCGTAACTATGAAAGACAACGGTGGGCTGCTATGCGTGGTGTTGACGAATGTGAGATGACCAGAAATCTCCCTGAGGGTCTAAGAAGAGACATCAAATACCATCTCTGTTTAGATTTGGTCAGACAGGTGCCACTGTTTCAACATATGGATGATCTGGTTCTAGAGAACATCTGTGACCGTGTGAAGTCTCTGATATTCACAAAGGGAGAAACAGTACGCTCTAAATTCCTCTAA 1527 0.4741 MATEREISRASRMHDYTTTDDEDDVVEDSELERDEEEEKQNRQHEGELENEASCARRSYTGRVVDPREKWVQEWNRVFLLVCAAGLFVDPLFFYALSISDSCMCLFVDGWFAVTVTVLRCMTDALHLWNILLRFKMAKRSFGFGGGTGAAADAGSSVALRYLKSRRGFFFDFFVILPIPQIVLWVAIPSLLEKGSVTVVMTVMLIMFLFQYLPKIYHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAGKCLKEECAKTSGCGIKMLSCHKPMYYGSSSLMDRERGRLAWAENREARSTCLNGPDSYNYGAYKWTVQLVTNDNRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRRLPQGFRQRVRNYERQRWAAMRGVDECEMTRNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETVRSKFL. 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09446 508 Pfam Ion transport protein 74 394 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca4g09446 508 Gene3D Helix hairpin bin 401 467 - -
Seca4g09446 508 MobiDBLite consensus disorder prediction 35 51 - -
Seca4g09446 508 SUPERFAMILY cAMP-binding domain-like 402 503 IPR018490 -
Seca4g09446 508 FunFam Cyclic nucleotide-gated ion channel 1 403 467 - -
Seca4g09446 508 SUPERFAMILY Voltage-gated potassium channels 66 397 - -
Seca4g09446 508 Gene3D - 91 398 - -
Seca4g09446 508 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 38 503 - -
Seca4g09446 508 MobiDBLite consensus disorder prediction 20 34 - -
Seca4g09446 508 MobiDBLite consensus disorder prediction 1 19 - -
Seca4g09446 508 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09446 Seca-Chr4 223831024 223837965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09446 61 506 Ion Channels AT5G54250 75.000 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09446 K05391 - gmx:100783341 811.601