Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09426 ATGATGGAAGGGGTTTCAAGGGAAGCCCAGATGTCGATTGCAGCTTCGTCCATGTTTCCTGGGTTCAGGTTTTGCCCCACCGACGAGGAGTTGATTTCATATTACCTTAGGAAGAAATTGGATGGCCATGAAGAGAGTGTTCAAGTTATTTCTGAGGTTGAGCTTTGTAAATATGAGCCTTGGGATTTACCAGCAGCCAAATCATTCATTCAATCAGATAACGAGTGGTTCTTCTTCTCTCCCCGTGGAAGAAAGTATCCAAATGGTTCACAAAGTAAAAGAGCAACAGAATGTGGCTATTGGAAGGCCACTGGCAAAGAGCGCAATGTAAAATCAGGTTCTAACATTATAGGTACAAAACGAACTTTGGTATTCCACTTAGGACGTGCACCTAAAGGGGAAAGGACTGAATGGATTATGCATGAGTACTGCATCAATGATAAGTCTCAGGATTCTTTGGTGGTTTGTCGCCTTAAGAGGAACACAGAATTCCGTTTACACGATGCTTCAAATAGAGCTTCTTCAAGTCAAATGCACCCTGTGAATTCACATGAAAGTGATTGTGCTGTCTCAGGAGGTGGTGGCATAGATCAAAGTGGTGGCTGTGAGCAAGACAAAGAGATTGGATGTTGCTCCAAAAGGAGCAGTAGCAGTTATGGTTCTCCTTCAATGGAGCAAATTGACTCTGTATCTGAATCAAATCAGCGACCAGCTAATGATGCTGCTCTAACAGAATCTTCTGATCACTTAAAGGAGGTGGATGAAGAGGATTGTTATGCTGAGATACTAAAGGATGATATCATCAAATTAGATGAATCATCAATCCAACAAGAGGCTCACACAAGACAACAGGAACCTACACAGGTGCATCCCTGCCAAGGTACAGCACAACGGAGAATAAGATTAAGGGTTGGGAATTCAAAGCATTCTACTAAACCAGTTAATTACCCAAGCACAGTGCACTCATCAAAGAGTACTAGTACTACTACTACTACCTTCCTTGCCAGAATAACCAACCCTTTGGTGGTATTTGCTTTCTTATTGGTTTTTACTTTGATAGGTATAGTATATATTTTTGGTCTTTATTGGAAGGTCACAAACAAATGA 1107 0.4146 MMEGVSREAQMSIAASSMFPGFRFCPTDEELISYYLRKKLDGHEESVQVISEVELCKYEPWDLPAAKSFIQSDNEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERNVKSGSNIIGTKRTLVFHLGRAPKGERTEWIMHEYCINDKSQDSLVVCRLKRNTEFRLHDASNRASSSQMHPVNSHESDCAVSGGGGIDQSGGCEQDKEIGCCSKRSSSSYGSPSMEQIDSVSESNQRPANDAALTESSDHLKEVDEEDCYAEILKDDIIKLDESSIQQEAHTRQQEPTQVHPCQGTAQRRIRLRVGNSKHSTKPVNYPSTVHSSKSTSTTTTTFLARITNPLVVFAFLLVFTLIGIVYIFGLYWKVTNK. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09426 368 MobiDBLite consensus disorder prediction 213 242 - -
Seca4g09426 368 MobiDBLite consensus disorder prediction 169 192 - -
Seca4g09426 368 MobiDBLite consensus disorder prediction 213 250 - -
Seca4g09426 368 Gene3D NAC domain 27 179 IPR036093 GO:0003677|GO:0006355
Seca4g09426 368 SUPERFAMILY NAC domain 10 160 IPR036093 GO:0003677|GO:0006355
Seca4g09426 368 ProSiteProfiles NAC domain profile. 18 161 IPR003441 GO:0003677|GO:0006355
Seca4g09426 368 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 276 - -
Seca4g09426 368 MobiDBLite consensus disorder prediction 169 184 - -
Seca4g09426 368 Pfam No apical meristem (NAM) protein 20 144 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09426 Seca-Chr4 223613116 223617111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09426 5 365 NAC Transcription Factor Family AT2G27300 45.109 1.12e-97 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca4g09426 NAM 1.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09426 - - cam:101495489 526.554