Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09408 ATGGAGGATCTCCCACCTGGTTTTCGTTTCTACCCAACAGAAGAGGAGCTAGTTGGCTTCTATCTACACAACCAGCTTGAAGGGCAACTACACCACATCAACAGAGTTATCCCAGTCATTGATATCAATGGTGTAGAGCCCTGGAACCTTCCAAGTATACAACAAAAACTTTCACCCTCTCTTCTCATTCTCATGATTAGGCTTAATTTGCTGCTATATATATACCAAGTTCATTCTTTTTTTTTTTTAACTCATTCAGTTTGTTGTAATCAATCAGCACTTGCAGGGGAGCTGTGTCGTGGTGACACGGAGCAATGGTTTTTCTTTTCACCAAGACAAGAGAGAGAGGCCAGGGGAGGAAGACCCAACAGAACCACAGGTAGTGGGTATTGGAAGGCCACGGGTTCTCCTGGTCACGTTTACTCTGCTGACAACAAAGTCATTGGGATGAAGAAAACCATGGTGTTTTACAATGGAAAAGCTCCTAGTGGAAAGAAAACCAAATGGAAGATGCATGAATACAAAGCCATTGAACACACTAATAACCAATCCAACCCAGCCACTCCTAAGTTGAGGCACGAATTCAGCTTGTGTCGTGTTTATGTCATATCGGGAAGCTTTCGATCATTTGATAGACGTCCATTAGAGAGGCCAAGAGTGGGATTAAGACAGCTTGATGCTTCAGCTTCAACAAGTGCTCATCAGCAGGTAGCAGCAGAGGTTGATGGATCAAGCTCCTCTGAAACTTCTCACTCTGGAGGAGACCAACGTGATGATGCTCAGGCTGGAGGGTCAAGTGGCACAAATTGGAATGTTGCACATAATGAGGTGGAAGGACCTCTTTGGGAATTAGAGCAACTTGATTGGCTCTAA 873 0.4433 MEDLPPGFRFYPTEEELVGFYLHNQLEGQLHHINRVIPVIDINGVEPWNLPSIQQKLSPSLLILMIRLNLLLYIYQVHSFFFLTHSVCCNQSALAGELCRGDTEQWFFFSPRQEREARGGRPNRTTGSGYWKATGSPGHVYSADNKVIGMKKTMVFYNGKAPSGKKTKWKMHEYKAIEHTNNQSNPATPKLRHEFSLCRVYVISGSFRSFDRRPLERPRVGLRQLDASASTSAHQQVAAEVDGSSSSETSHSGGDQRDDAQAGGSSGTNWNVAHNEVEGPLWELEQLDWL. 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09408 290 Pfam No apical meristem (NAM) protein 5 175 IPR003441 GO:0003677|GO:0006355
Seca4g09408 290 Gene3D NAC domain 13 206 IPR036093 GO:0003677|GO:0006355
Seca4g09408 290 MobiDBLite consensus disorder prediction 226 274 - -
Seca4g09408 290 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 231 - -
Seca4g09408 290 MobiDBLite consensus disorder prediction 226 251 - -
Seca4g09408 290 ProSiteProfiles NAC domain profile. 4 203 IPR003441 GO:0003677|GO:0006355
Seca4g09408 290 SUPERFAMILY NAC domain 3 54 IPR036093 GO:0003677|GO:0006355
Seca4g09408 290 MobiDBLite consensus disorder prediction 259 273 - -
Seca4g09408 290 SUPERFAMILY NAC domain 87 201 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09408 Seca-Chr4 223392406 223394128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09408 2 289 NAC Transcription Factor Family AT3G44350 47.569 3.82e-84 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca4g09408 NAM 9.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09408 - - gmx:100780264 377.096