Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09394 ATGAGTAAGCTTCAGAGTGATGCTCTAAGAGAAGCTATCTCAGGAATCATGGCTGATTCCAAGGAGAAAAACCGTAAATTTGTGGAGACCATTGAACTCCAAATTGGGCTGAAAAACTATGACCCTCAGAAGGATAAGCGTTTCAGTGGCTCTGTCAAGTTGCCACACATTCCTCGCCCCAAGATGAAAATTTGCATGCTTGGTGATGCCCAACATGTTGAAGAGGCAGAGAAGATAGGATTGGACTGGATGGATGTTGAAGCCTTGAAGAAACTAAACAAAAATAAGAAATTAGTGAAGAAACTAGCTAAGAAATACCATGCCTTTTTAGCTTCTGAAGCAGTTATCAAGCAGATCCCTCGTCTTTTGGGTCCTGGGAAGTTCCCTACACTTGTTACTCACCAAGAATCTCTTGAGTCAAAGGTTAATGAGACTAAGGCTATGGTCAAATTCCAGCTTAAGAAGGTGCTCTGCATGGGAGTAGCTGTCGGAAATGTTAGTATGGAGGAAAAGCAAATCTTCCAAAATGTACAACTGAGTGTTAACTTCCTTGTCTCCTTGTTGAAAAAGAATTGGCAAAATGTTAGGTGCTTGTATCTGAAGAGTACCATGGGGAAATCGTACCGCGTCTTTTAA 636 0.4151 MSKLQSDALREAISGIMADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDWMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09394 211 FunFam Ribosomal protein 65 149 - -
Seca4g09394 211 CDD Ribosomal_L1 9 210 IPR028364 -
Seca4g09394 211 Gene3D - 131 209 - -
Seca4g09394 211 Gene3D - 1 119 - -
Seca4g09394 211 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 11 205 - -
Seca4g09394 211 Pfam Ribosomal protein L1p/L10e family 22 205 IPR028364 -
Seca4g09394 211 SUPERFAMILY Ribosomal protein L1 3 211 IPR023674 -
Seca4g09394 211 FunFam Ribosomal protein L10a 1 119 - -
Seca4g09394 211 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 1 211 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Seca4g09394 211 FunFam Ribosomal protein 132 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09394 Seca-Chr4 223106267 223108424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09394 1 211 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 86.574 1.57e-122 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09394 K02865 - gmx:100808580 387.111