Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09391 ATGTACCATCATCACCAACATCAAGGGAAAAACATCCATTCTTCTTCAAGAATGCCAATCCCCTCTGAGAGGCATATGTTCCTTCAAACAGGAAATGGGTCTGGTGATTCTGGACTTGTGCTCTCAACTGATGCAAAGCCTAGATTAAAATGGACACCTGATCTTCATGCCAGGTTTATAGAAGCAGTCAATCAGTTAGGTGGAGCTGACAAGGCAACTCCAAAAACGGTAATGAAACTCATGGGGATTCCAGGGCTTACCTTATATCATCTAAAGAGTCATCTTCAGAAGTACAGATTGAGCAAGAATCTGCATGGACAAAGCAACAACGTGACACACAAAATCACAACAAATGCAGGTGCAGGAACTGGAGAGAGACTTTCTGAAACCAATGGAACTCACATAAATAAATTAAGCCTTGGACCACAGCCTAACAACAGAGATTTACATATAAGCGAGGCACTACAGATGCAGATTGAGGTTCAGAGAAGACTCAATGAACAACTTGAAGTACAGAGACACTTGCAGGTTCGGATAGAAGCCCAAGGAAAGTACCTCCAATCTGTGCTGGAGAAAGCACAAGAGACTCTTGGTAGACAAAATTTGGGAATAGTAGGACTTGAAGCTGCTAAAGTTCAACTTTCAGAGCTTGTGTCCAAAGTATCCTCTCAGTGTCTGAACTCAGCATTTTCAGAGCTAAAGGAACTACAAGGATTTTGCCCCCAGCAAACACAAACCAACCAGCCAAATGACTGCTCAATGGACAGTTGCCTCACATCCTGTGACAGATCACAGAAGGAACAAGATATTCAAAATGGGGGCATTGGCTTAAGACACTTTAATGGCCACATATTCATGGAACGAAAGGAAGCCACAGTCACAGAAGTTCCCAATCTTAGGAACCCTGAACTCAAGTGGTGTGATGAAGTGAAAAAGAACAACACTTTTCTCACCCCATTGGGTAAGAATGAAGAAAGAACTAATTATGCTGTAGAAAGCAGTCCCAACAACCTGTCTATGACCATTGGACTTGAAAGAGAAACAGAGAATGGCATCAGCATGTACCCTCCTGAGAGAGTAATCACAGAAAATCACTCAGATGGTGAATTCCAGCACAGGAACATAACTAGGACAGAAACAATGAAACAAGTGGATGATAGGTTGCCTTCTTACTTTGCAGCAGCAAGATTGGACCTAAACAGCCGTGGAGACAATGAAGCTACAACCAGTTGTAAACAACTGGACTTGAATAGATTCAGTTGGAACTGA 1269 0.4247 MYHHHQHQGKNIHSSSRMPIPSERHMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNVTHKITTNAGAGTGERLSETNGTHINKLSLGPQPNNRDLHISEALQMQIEVQRRLNEQLEVQRHLQVRIEAQGKYLQSVLEKAQETLGRQNLGIVGLEAAKVQLSELVSKVSSQCLNSAFSELKELQGFCPQQTQTNQPNDCSMDSCLTSCDRSQKEQDIQNGGIGLRHFNGHIFMERKEATVTEVPNLRNPELKWCDEVKKNNTFLTPLGKNEERTNYAVESSPNNLSMTIGLERETENGISMYPPERVITENHSDGEFQHRNITRTETMKQVDDRLPSYFAAARLDLNSRGDNEATTSCKQLDLNRFSWN. 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09391 422 Pfam Myb-like DNA-binding domain 48 99 IPR001005 -
Seca4g09391 422 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 294 IPR044848 GO:0003700
Seca4g09391 422 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Seca4g09391 422 Pfam MYB-CC type transfactor, LHEQLE motif 150 196 IPR025756 -
Seca4g09391 422 NCBIfam myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Seca4g09391 422 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
Seca4g09391 422 Coils Coil 152 172 - -
Seca4g09391 422 Gene3D - 45 103 - -
Seca4g09391 422 FunFam Myb family transcription factor 45 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09391 Seca-Chr4 223063079 223066642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09391 78 422 G2-like Transcription Factor Family AT3G04030 51.289 2.89e-98 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca4g09391 Myb_DNA-binding 3.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09391 - - gmx:100810396 709.523