Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09386 ATGGAAGATTCTGATCAACTCGCCAAATCTGCCGAAAACCAGCAAACTGAACAAGTGTGCAGTTTCTTTAGAAAACCGATTAATAAGAAGAATATAAGGAAACGCACTATTGAAAATGAAGATGAGGAGGACGACTCAAACAATGAAAGCTCTTTCTTTCATGTTCAGAAAAAGACCTTGAAGCCTGCCAATAAGTTGTACTTTTCCACTGGTTCTTCAAAAAGCTCTGCATCTGCTGAACCGAGTGAAGAATCTGGGAAACCAGTCTTTCAGTTTGAGTCTTCAAAAGAGATTCAAGTTGAACATGACAGCAAAGCAACGGCAACCCTAGAGACCGAGACTGAGTTTTCGAAAGATGCTCGTGCAATCCGTGAAAGGGCTCTTAAGAAAGCGGCAGAGAGTCTGAAGGGGAAAGGCAAAAATTCTGAGGATGAAAAGTTATATAAGGGAATCAACAGTTACAAAGACCACAAAGCTGGCTTTCGTAGAGAGCAAACGATTGCTAGTGAAAAAGCTGGTGGGGCTCATGGTCCTCTTAGGGCTTCGGCTCATATAAGAGTTTCAGCAAGATTTGATTATCAGCCTGACATATGTAAGGATTACAAGGAAACTGGTTACTGTGGGTACGGTGATTCATGTAAGTTTATGCATGATCGAGGGGATTATAAGTCTGGGTGGCAGTTGGAGAAGGAATGGGAAGAAGCTGAGAAGGCAAGGAAGATGAGATTGGCTGCAGGTGAGGATGTGGATGAGGAGGACACTAATGTGACTGATGAAGATGATGATGATTCATTACCATTTGCATGTTTCATTTGTAGAAAGCCATTTGTGGATCCTGTTGTAACCAAGTGCAAGCACTACTTCTGCGAGCATTGTGCGTTGAAGCATCATGCAAAGAATAAGAAGTGTTTTGTCTGCAACCAGCCAACACTTGGTATTTTTAATGTTGCTCATGAGATACGCAAGAAGATGGCCGAGGAATGA 984 0.4228 MEDSDQLAKSAENQQTEQVCSFFRKPINKKNIRKRTIENEDEEDDSNNESSFFHVQKKTLKPANKLYFSTGSSKSSASAEPSEESGKPVFQFESSKEIQVEHDSKATATLETETEFSKDARAIRERALKKAAESLKGKGKNSEDEKLYKGINSYKDHKAGFRREQTIASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWEEAEKARKMRLAAGEDVDEEDTNVTDEDDDDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRKKMAEE. 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09386 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 326 IPR013083 -
Seca4g09386 327 FunFam RING finger protein 113A 267 326 - -
Seca4g09386 327 Pfam Zinc finger, C3HC4 type (RING finger) 268 310 - -
Seca4g09386 327 SUPERFAMILY CCCH zinc finger 191 223 IPR036855 GO:0046872
Seca4g09386 327 SMART c3hfinal6 192 219 IPR000571 GO:0046872
Seca4g09386 327 FunFam Zinc finger CCCH domain-containing protein 1 190 224 - -
Seca4g09386 327 MobiDBLite consensus disorder prediction 52 82 - -
Seca4g09386 327 MobiDBLite consensus disorder prediction 1 110 - -
Seca4g09386 327 PANTHER ZINC FINGER PROTEIN 183 13 327 IPR039971 -
Seca4g09386 327 SUPERFAMILY RING/U-box 268 311 - -
Seca4g09386 327 ProSitePatterns Zinc finger RING-type signature. 284 293 IPR017907 -
Seca4g09386 327 CDD RING-HC_RNF113A_B 262 315 - -
Seca4g09386 327 ProSiteProfiles Zinc finger C3H1-type profile. 192 220 IPR000571 GO:0046872
Seca4g09386 327 ProSiteProfiles Zinc finger RING-type profile. 269 307 IPR001841 -
Seca4g09386 327 Gene3D - 190 224 - -
Seca4g09386 327 MobiDBLite consensus disorder prediction 8 22 - -
Seca4g09386 327 SMART ring_2 269 306 IPR001841 -
Seca4g09386 327 MobiDBLite consensus disorder prediction 96 110 - -
Seca4g09386 327 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 193 218 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09386 Seca-Chr4 223021807 223025584 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09386 10 327 C2H2 Transcription Factor Family AT1G01350 70.440 5.88e-169 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca4g09386 zf-C3HC4_3 8.5e-09 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09386 K13127 - gmx:100787434 562.377