Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09373 ATGGGTTTGAGAGAGTGCAATGTAGAAGACAAGAATAATAATAATCTATGTCTTCAAACACCAACTTTCATTGAATGGCTCAAACCATCTTCCTCATCTTCTTCTTTGGTTCAGCATGAACTTGTGAGAGAAACTATCCAGTTTTTGCCTATTATAAATGGGTTCAACCAAGGAAAGCCCTTTGAAGATCATGGGGTGCAAAAGGAAGGTTTTGAAGTAAAAGAAGAGAAAGTGGAACAGGTGACTGTGGCTTTGCACATTGGATTGCCTAACACAGGAGATCTTGATGATGATGATGATGATGAGAAGAAGAAGGTTTTTGATCATGTTAAAGAAGAAGAAGCCTTGAAGGAAAAAACTTTCCATGGTTGTTCTAATTTTAACAAGCAAGAGGAGAGAAGGTTCTGGATACCAACTCCTGCACAGATCCTTGTTGGACCGATGCAGTTTGCTTGCTCCATATGCAACAAGACCTTCAATAGATATAACAATATGCAGATGCATATGTGGGGGCATGGGTCCGAATTTAGGAAAGGGCCAGACTCACTCAAAGGAACACAACCAGCAGCAATGTTAAGGCTACCATGTTATTGTTGTGCCCAGGGTTGCAAGAACAACATCAATCATCCAAGAGCAAAGCCCTTGAAAGACTTCAGAACTCTCCAAACCCACTACAAGAGAAAGCATGGTGCAAAGCCATTCATGTGCAGAAAATGTGCTAAGACATTTGCAGTTAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTGTGGTATTGCACTTGTGGTTCAGATTTTAAGCACAAAAGATCTCTTAAAGATCATATTAGATCCTTTGGAAAAGGTCACTCACCACATCCTTCTCTTGAAGGCTTTGAAGATGAGAGAGATTGCATTACTGGATCTGATAATGAAGATGAAGAAGTAGTTGCTCCTCATGCATGA 951 0.4059 MGLRECNVEDKNNNNLCLQTPTFIEWLKPSSSSSSLVQHELVRETIQFLPIINGFNQGKPFEDHGVQKEGFEVKEEKVEQVTVALHIGLPNTGDLDDDDDDEKKKVFDHVKEEEALKEKTFHGCSNFNKQEERRFWIPTPAQILVGPMQFACSICNKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCAKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSLEGFEDERDCITGSDNEDEEVVAPHA. 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09373 316 SUPERFAMILY beta-beta-alpha zinc fingers 220 254 IPR036236 -
Seca4g09373 316 SUPERFAMILY beta-beta-alpha zinc fingers 136 173 IPR036236 -
Seca4g09373 316 PANTHER ZINC FINGER PROTEIN WIP2 30 305 IPR043584 GO:0003700|GO:0010468
Seca4g09373 316 ProSitePatterns Zinc finger C2H2 type domain signature. 152 172 IPR013087 -
Seca4g09373 316 SMART c2h2final6 197 229 IPR013087 -
Seca4g09373 316 SMART c2h2final6 150 172 IPR013087 -
Seca4g09373 316 SMART c2h2final6 234 254 IPR013087 -
Seca4g09373 316 FunFam Zinc finger protein WIP2 203 285 - -
Seca4g09373 316 Gene3D Classic Zinc Finger 149 172 - -
Seca4g09373 316 Gene3D Classic Zinc Finger 192 282 - -
Seca4g09373 316 ProSiteProfiles Zinc finger C2H2 type domain profile. 150 177 IPR013087 -
Seca4g09373 316 MobiDBLite consensus disorder prediction 281 300 - -
Seca4g09373 316 MobiDBLite consensus disorder prediction 281 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09373 Seca-Chr4 222750640 222753922 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09373 16 302 C2H2 Transcription Factor Family AT1G08290 55.132 7.04e-120 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g09373 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09373 - - gmx:100819306 479.944