Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09367 ATGTATAGCAATTTCAAGGAGCAAGCGATAGAGTACGTGAAGCAAGCCGTGCAGGAAGACAATGCTGGGAACTACGCGAAAGCGTTCCCTCTGTACATGAACGCTTTGGAGTACTTCAAGACCCATTTGAAGTACGAGAAGAACCCTAAGATCAAAGAAGCCATCACCCAGAAATTTACTGAGTATCTTCGCCGTGCTGAGGAGATCCGGGCCGTCCTTGATGATGGAGGGCCTGGCCCAGCCTCCAACGGGGACGCCGCCGTAGCGACTCGGCCCAAGACGAAGCCCAAGGACGGGGAAGGTGGAGACGGGGAGGACCCCGAGCAGGCCAAGCTCAGGGCTGGGCTGAACTCGGCGATCATAAGGGAGAAGCCCAATGTGAAGTGGAACGACGTCGCAGGATTGGAGAGCGCCAAGCAGGCCTTGCAGGAGGCTGTGATCTTGCCTGTGAAGTTCCCTCAGTTCTTTACTGGTAAAAGAAGACCCTGGAGAGCATTTTTGTTGTATGGACCACCTGGAACAGGGAAATCTTATTTAGCCAAGGCAGTTGCAACAGAAGCTGAATCTACATTTTTCAGTATTTCTTCATCAGATCTTGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTAGTTTCAAACCTTTTCCAAATGGCTCGAGAAAGTGCCCCTTCTATCATATTTATTGATGAAATAGATTCCCTATGTGGTCAGCGTGGAGAAGGCAATGAGAGTGAAGCTTCAAGACGAATTAAAACAGAACTTCTGGTGCAGATGCAGGGTGTAGGACACAATGATCAGAAAGTTCTTGTTCTTGCAGCAACAAATACACCCTATGCTTTAGACCAGGCAATAAGGCGTCGTTTCGATAAGCGTATATATATTCCCCTACCAGATATGAAGGCTCGCCAACACATGTTCAAGGCAAGGGCAATAATTGAGCAGGTACATCTAGGAGATACTCCCAATAACTTGACTGAAAGTGATTTTGAGTACTTGGCTAGCAGGACAGATGGGTTTTCTGGTTCAGATATATCTGTCTGTGTGAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCTATGTTCTTCTTTAAGAATCCTGAGGGTATGTGGATCCCATGTGGACCAAAGCAACATGGTGCAGTACAAACCACAATGCAGGATCTTGCTACAAAAGGACTTGCTTCCAAGATCCTTCCACCCCCTATCACGAGAACAGATTTTGAAAAGGTATTAGCGAGACAAAGACCAACTGTAAGCAAATCTGACCTTGAGGTTCATGAGAGATTCACGAAGGAGTTTGGAGAAGAAGGTTAA 1323 0.4671 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVATRPKTKPKDGEGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEAESTFFSISSSDLVSKWMGESEKLVSNLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDMKARQHMFKARAIIEQVHLGDTPNNLTESDFEYLASRTDGFSGSDISVCVKDVLFEPVRKTQDAMFFFKNPEGMWIPCGPKQHGAVQTTMQDLATKGLASKILPPPITRTDFEKVLARQRPTVSKSDLEVHERFTKEFGEEG. 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09367 440 Pfam Vps4 C terminal oligomerisation domain 373 437 IPR015415 -
Seca4g09367 440 MobiDBLite consensus disorder prediction 73 109 - -
Seca4g09367 440 PANTHER AAA DOMAIN-CONTAINING 16 438 - -
Seca4g09367 440 FunFam Vacuolar protein sorting-associated protein 4 125 305 - -
Seca4g09367 440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 436 IPR027417 -
Seca4g09367 440 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Seca4g09367 440 SMART smart 2 79 IPR007330 -
Seca4g09367 440 SUPERFAMILY MIT domain 2 81 IPR036181 -
Seca4g09367 440 SMART AAA_5 162 298 IPR003593 GO:0016887
Seca4g09367 440 Gene3D - 125 428 IPR027417 -
Seca4g09367 440 ProSitePatterns AAA-protein family signature. 268 287 IPR003960 GO:0005524|GO:0016887
Seca4g09367 440 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Seca4g09367 440 Gene3D - 298 420 - -
Seca4g09367 440 Gene3D - 6 75 - -
Seca4g09367 440 CDD MIT_VPS4 4 77 IPR045253 -
Seca4g09367 440 CDD RecA-like_VPS4 124 294 - -
Seca4g09367 440 MobiDBLite consensus disorder prediction 91 109 - -
Seca4g09367 440 FunFam vacuolar protein sorting-associated protein 4A 298 420 - -
Seca4g09367 440 Pfam ATPase family associated with various cellular activities (AAA) 167 296 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09367 Seca-Chr4 222648328 222652808 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09367 161 361 Calmodulin-binding Proteins AT3G56690 34.975 6.87e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09367 K12196 - gmx:100788150 816.609