Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09346 ATGAAGGTCATCGCTGCATATTTGTTGGCCGTATTGGGAGGGAATTCATCCCCTTCAGCTGATGATCTCAAGAACATACTCGGCTCAGTTGGAGTTGAGGCTGAGGATGAGATGATTGAGTTGCTCTTAAGTGAAGTCAAGGGCAAAGATTTTGCTGAGCTAATTGCCAGTGGAAGAGAAAAGTTGGCTTCAGTGCCTTCTGGTGGTGGTGGTGTCGCTGTTGCTGCCGCACCTGCAGCTGGAGGTGCTGGTGGTGGTGCTGCACCTGCTGCAGAAGCAAAGGAGGAAAAGAAGGTAGAAGAGAAGGAGGAGTCAGATGATGATATGGGTTTCAGCTTATTCGACTAA 348 0.4914 MKVIAAYLLAVLGGNSSPSADDLKNILGSVGVEAEDEMIELLLSEVKGKDFAELIASGREKLASVPSGGGGVAVAAAPAAGGAGGGAAPAAEAKEEKKVEEKEESDDDMGFSLFD. 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09346 115 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 115 IPR044076 GO:0002182|GO:0003735|GO:0022625
Seca4g09346 115 FunFam 60S acidic ribosomal protein P2 1 59 - -
Seca4g09346 115 Pfam 60s Acidic ribosomal protein 17 114 - -
Seca4g09346 115 MobiDBLite consensus disorder prediction 91 105 - -
Seca4g09346 115 Gene3D - 1 59 IPR038716 -
Seca4g09346 115 MobiDBLite consensus disorder prediction 78 115 - -
Seca4g09346 115 Hamap 50S ribosomal protein L12 [rpl12]. 2 115 IPR027534 GO:0003735|GO:0005840|GO:0006414
Seca4g09346 115 CDD Ribosomal_P2 1 115 IPR044076 GO:0002182|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09346 Seca-Chr4 221683172 221684361 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09346 1 115 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 69.565 1.72e-32 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09346 K02943 - ming:122089001 129.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09346 4 221683172 221684361 Seca4g09346 4 221683172 221684361 ECH